Welcome to ANISEED API
- URL:
- METHOD:
- FORMAT:
- FUNCTIONS:
- organism_id integers for different species:
- Botryllus schlosseri: 170
- Botrylloides leachii: 394
- Ciona robusta: 464
- Ciona savignyi: 88
- Halocynthia aurantium: 34
- Halocynthia roretzi: 239
- Molgula oculata: 140
- Molgula occulta: 438
- Molgula occidentalis: 204
- Phallusia fumigata: 210
- Phallusia mammillata: 231
- Corella inflata: 140
- Oikopleura dioica: 100
- URL PARAMETERS FOR EACH FUNCTION:
- Url for function:
- Required parameters:
- Notes:
- example: list of all Ciona robusta genes
- example2: list all genes starting with 'fox'
- Url for function:
- Required parameters:
- Notes:
- example: list of all Ciona robusta genes expressed at stage 9.
- Url for function:
- Required parameters:
- Notes:
- example: list of all Ciona robusta genes expressed between stages 0 and 9 .
- Cache notice:
- Url for function:
- Required parameters:
- Notes:
- example: list of all Ciona robusta genes expressed at A8.14 cell pair.
- Url for function:
- Required parameters:
- Notes:
- example: list of all Ciona robusta territories where gene "otx" is expressed.
- Url for function:
- Required parameters:
- Notes:
- example: list of all active organisms in the database.
- Url for function:
- Required parameters:
- Notes:
- example: list of all authors in the database.
- Url for function:
- Required parameters:
- Notes:
- example: list of all Ciona robusta clones for the gene "otx".
- Url for function:
- Required parameters:
- Notes:
- example: list of all Ciona robusta constructs containing searched by the word "otx".
- Url for function:
- Required parameters:
- Notes:
- example: list of all minimal promoters for Ciona robusta.
- Url for function:
- Required parameters:
- Notes:
- example: list of all types of molecular tools in the database.
- Url for function:
- Required parameters:
- Notes:
- example: list of all molecular tools containing searched by the word "otx".
- Url for function:
- Required parameters:
- Notes:
- example: list of all publications containing searched by the word "Lemaire".
- Url for function:
- Required parameters:
- Notes:
- example: list of all Ciona robusta cis-regs containing searched by the word "otx".
- Url for function:
- Required parameters:
- Notes:
- example: list of all available reporter genes in the database.
www.aniseed.fr/api
GET
JSON
JSON (JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans to read and write.
It is easy for machines to parse and generate. It is based on a subset of the JavaScript Programming Language,
Standard ECMA-262 3rd Edition - December 1999
Reference and example:
1. list all genes
2. list all genes by stage
3. list all genes by stage range
4. list all genes by territory
5. list all territories by gene
6. list all active organisms
7. list all article authors
8. list all clones by gene
9. list all constructs
10. list all minimal promoters
11. list all molecular tool types
12. list all molecular tools
13. list all publications
14. list all cis-reg regions
15. list all reporter genes
1. all genes
/api/all_genes:?parameter1=& parameter2=
organism_id=[integer]
search=[alphanumeric]
/api/all_genes:?organism_id=464
/api/all_genes:?organism_id=464&search=fox
2. all genes by stage
/api/all_genes_by_stage:?parameter1=& parameter2=
organism_id=[integer]
stage=[alphanumeric]
/api/all_genes_by_stage:?organism_id=464&stage=stage_9
when defining stage keep this form [stage_#] , where # is a stage number.
3. all genes by stage range
/api/all_genes_by_stage_range:?parameter1=& parameter2= & parameter3=
organism_id=[integer]
start_stage=[alphanumeric]
end_stage=[alphanumeric]
/api/all_genes_by_stage_range:?organism_id=464&start_stage=stage_0&end_stage=stage_9
when defining stage keep this form [stage_#] , where # is a stage number.
If the previous function all_genes_by_stage is slow, by running this function with parameters start_stage=0 and end_stage=49 you can generate the cache for this and the previous function.
4. all genes by territory
/api/all_genes_by_territory:?parameter1=& parameter2=
organism_id=[integer]
cell=[alphanumeric]
/api/all_genes_by_territory:?cell=A8.14_cell_pair&organism_id=464
when defining the cell keep this form [A8.14_cell_pair] , this is how the data is annotated if you just write 8.14 it will not work.
5. all territories by gene
/api/all_territories_by_gene:?parameter1=& parameter2=
organism_id=[integer]
gene=[alphanumeric]
/api/all_territories_by_gene:?gene=otx&organism_id=464
In the place of "otx" you can write KH gene model or unique gene id
6. all active organisms
/api/active_organisms:
none
/api/active_organisms:
7. all authors in the database
/api/authors:
none
/api/authors:
8. all clones by gene
/api/clones:?parameter1=& parameter2=
organism_id=[integer]
gene=[alphanumeric]
/api/clones:?gene=otx&organism_id=464
In the place of "otx" you can write KH gene model or unique gene id
9. all constructs search
/api/constructs:?parameter1=& parameter2=
organism_id=[integer]
search=[alphanumeric]
/api/constructs:?search=otx&organism_id=464
In the place of "otx" you can use any word you think is relevant for your search.
10. all minimal promoters by organism
/api/minimal_promoters:?organism_id=
organism_id=[integer]
/api/minimal_promoters:?organism_id=464
11. all molecular tool types in the database
/api/molecular_tool_types:
none
/api/molecular_tool_types:
12. all molecular tools search
/api/constructs:?parameter1=
search=[alphanumeric]
/api/molecular_tools:?search=otx
In the place of "otx" you can use any word you think is relevant for your search.
13. all publications search
/api/publications:?parameter1=
search=[alphanumeric]
/api/publications:?search=lemaire
In the place of "Lemaire" you can use any word you think is relevant for your search.
14. all cis-regulatory regions search
/api/regulatory_regions:?parameter1=& parameter2=
organism_id=[integer]
search=[alphanumeric]
/api/regulatory_regions:?search=otx&organism_id=464
In the place of "otx" you can use any word you think is relevant for your search.
15. all reporter genes in the database
/api/reporter_genes:
none
/api/reporter_genes: