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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C3.736.v1....' > 
  2. Region 'REG00000848' > 
  3. Transcript 'KH2012:KH.C4.125.v2....' > 
  4. EST 'AV998115' > 
  5. Transcript 'Phmamm.CG.MTP2014.S9...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S961.g13004.02.t

Possible name(s)

SOX13; SOX5; SOX6

Gene model

Phmamm.CG.MTP2014.S961.g13004

Location

S961 [11,314 / 14,453]

Sequences

Amino acid sequence

Length: 213

>Phmamm.CG.MTP2014.S961.g13004.02.p
MALENGEHRIMSQGLTHRVHASTAKSPKRKIMKSNYYSPNRHEALNNDGVCSSQEDVPMN
LTRKSTPTPSTHFTNNIISAGLRTTSKIHKTDGLSSQEVLQSRSGGFIEQSDGICGYSGK
NPQGAKWKEMSTVEKQPYYEEQARLSKLHLEKYPDYKYKPRPKRTCIVNGKKLRISEYKA
LMRMRRNGIEAPNDVGLTTTNHSYGVPMSMKVI

Nucleotide sequence

Length: 642

>Phmamm.CG.MTP2014.S961.g13004.02.t
ATGGCTCTGGAAAATGGGGAACATCGAATAATGTCTCAAGGTCTTACACACCGCGTGCAC
GCTTCTACTGCCAAATCCCCAAAGAGAAAGATCATGAAAAGCAATTATTATTCTCCGAAT
AGACATGAGGCTTTAAACAATGACGGCGTTTGTTCATCTCAAGAGGATGTTCCAATGAAT
TTGACAAGGAAATCTACACCAACTCCATCTACTCACTTCACAAATAACATAATTTCCGCA
GGCTTAAGAACTACATCTAAAATTCACAAAACAGATGGGCTATCTTCACAGGAGGTTTTG
CAATCACGTAGTGGAGGTTTTATTGAACAATCAGATGGGATTTGTGGTTACAGTGGAAAA
AATCCTCAAGGGGCAAAATGGAAGGAAATGTCAACTGTAGAAAAACAGCCATATTATGAA
GAACAAGCAAGACTGAGCAAGCTCCATTTGGAAAAATACCCCGACTACAAATACAAACCA
CGTCCCAAAAGAACTTGCATTGTTAATGGGAAAAAACTGAGAATATCAGAATATAAGGCC
CTGATGCGAATGAGACGAAATGGAATCGAGGCCCCGAATGACGTAGGTTTGACCACAACA
AACCATTCGTACGGAGTACCAATGTCAATGAAGGTAATCTAA

InterProScan

Gene3D
HMG_box_dom_sf (IPR036910) - T[90-165] 4.2E-11
SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[124-179] 3.4E-10
ProSiteProfiles
HMG_box_dom (IPR009071) - T[124-157] 9.201

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX5_HUMAN 72.603 % 119 4.28E-31
SOX6_HUMAN 82.54 % 118 9.87E-31
SOX13_HUMAN 78.125 % 115 7.8E-30