- Transcript 'Phmamm.CG.MTP2014.S9...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S90.g02962.01.t
Possible name(s)
DDX27; DDX47; DDX54
Gene model
Location
S90 [247,698 / 254,182]
Amino acid sequence
Length: 703
>Phmamm.CG.MTP2014.S90.g02962.01.p
EEDLTIEPEGSDSDEEITIVSKKQRTQKKLEKKGFNPDFQFEDDGFYETKWTLESALHNA
LKQKKIHTTLDQKIDQVRRKQYKPISHEKPEDVDDLSDQIEDENEVENVGKIKTDKINLI
NRKRKRNANAEEDDSNLPVPLAEIQDSSGGDKNMSWDPTLGFQEMNLSRPLLKSISEINY
VTPTPIQQAAIPVGLLGRDISACAATGTGKTAAFMLPVLERLLYRPQSSAFTRVLCLVPT
RELAVQVYSVTQQLAQHSSIRICLAAGGLDIKTQEAALRQGPDIVIATPGRLIDHLHNTP
SFDLHLVEILILDEADRMLDEFFEDQMNEIIKLCSHQRQTMLFSATMSEQVQELAAVSLK
NPVKIFVNSNTDVAPYLKQEFIRIRPNREGDREAIVAALCSRSFISNVLVFTQTKKQAHR
MHIVLGLLGLKAGELHGDLSQTQRLEGLRRFKNEDVDILVCTDLAARGLDIENVKTVINL
TMPNTHQHYVHRVGRTARAGKSGRSVSLVGESERKLLKEIVKFAKNQVKSRVVPAEVVNK
FADKLKLLENEVGEVMQMEAQEKTLLAQENQLKKAEKIVKGEAPEKRNWFQSKIEREMSR
AERMLGSHSKVPKKFKKPSGKKGPSAPTTADARVEVELRKTREFQKRQLKRNRKEKRTRA
CAEPIAKVQNVVKSRPKKKSSFDAELTNTSKRKNAKHRNIKQR
Nucleotide sequence
Length: 2,109
>Phmamm.CG.MTP2014.S90.g02962.01.t
GAAGAGGATTTAACCATAGAACCTGAGGGCAGTGACTCAGATGAAGAGATTACCATTGTC
AGCAAAAAGCAAAGGACACAAAAAAAGTTAGAAAAAAAAGGATTTAATCCTGACTTTCAA
TTTGAAGATGATGGTTTTTATGAAACAAAGTGGACCTTAGAATCAGCACTGCACAATGCT
TTAAAGCAGAAGAAAATTCATACAACACTGGATCAAAAAATTGACCAAGTAAGAAGAAAG
CAATATAAGCCTATTTCCCATGAAAAGCCTGAAGATGTTGATGACTTATCTGATCAAATA
GAGGATGAAAATGAGGTTGAAAATGTTGGCAAAATAAAAACTGACAAAATAAACCTCATC
AATCGGAAAAGAAAAAGAAATGCTAATGCAGAAGAAGATGACTCTAATTTACCTGTTCCA
CTTGCTGAAATACAAGATAGCAGTGGTGGTGATAAAAACATGTCATGGGACCCGACTTTG
GGTTTTCAGGAAATGAACCTTTCCAGACCCTTGTTAAAATCCATCAGTGAAATAAACTAT
GTCACACCAACCCCTATTCAGCAAGCAGCAATACCTGTTGGTTTGCTTGGCAGAGATATA
TCAGCTTGTGCAGCAACTGGGACAGGTAAAACAGCTGCTTTTATGTTACCTGTCCTGGAA
CGACTTCTCTACCGTCCACAATCATCAGCCTTTACAAGAGTCCTGTGTCTTGTTCCTACC
AGAGAACTTGCAGTTCAAGTGTATTCTGTAACCCAACAACTTGCACAGCATAGCTCAATT
AGAATATGTCTTGCTGCGGGTGGTCTTGATATCAAAACACAGGAAGCAGCACTACGACAG
GGGCCAGATATTGTCATTGCCACACCGGGTCGTTTAATTGATCATTTGCACAACACACCT
TCATTTGACCTCCATCTTGTTGAAATCCTCATTCTTGATGAGGCTGATAGAATGCTTGAT
GAGTTTTTTGAAGACCAGATGAATGAAATCATCAAACTATGTTCCCACCAAAGACAGACA
ATGTTATTTTCTGCCACAATGTCAGAACAGGTACAAGAACTTGCTGCAGTTTCGTTAAAA
AATCCGGTAAAAATATTTGTGAACAGCAACACTGATGTGGCACCGTACCTGAAACAAGAG
TTCATACGAATTCGACCAAACAGAGAAGGAGATCGAGAGGCTATTGTTGCAGCTCTTTGC
AGCAGATCTTTCATAAGCAATGTGTTGGTGTTCACTCAAACAAAAAAGCAAGCACACAGA
ATGCATATTGTTCTTGGATTACTTGGTTTAAAGGCTGGAGAACTTCATGGGGATTTATCC
CAAACTCAACGTCTTGAAGGTTTACGGCGATTTAAGAACGAAGACGTTGACATTCTTGTG
TGTACAGATCTTGCGGCGCGTGGACTGGATATCGAAAACGTTAAAACAGTTATCAATTTA
ACGATGCCAAACACGCATCAGCATTACGTACATCGCGTTGGGCGTACTGCTAGAGCTGGA
AAAAGTGGGCGATCTGTTTCGTTGGTGGGCGAAAGCGAGCGTAAACTCCTAAAGGAAATT
GTGAAGTTTGCAAAAAATCAAGTTAAGAGTCGTGTCGTTCCTGCAGAGGTTGTCAACAAA
TTTGCCGACAAACTGAAGCTGCTTGAGAACGAAGTGGGCGAAGTGATGCAAATGGAAGCA
CAGGAGAAAACGCTTCTTGCACAGGAAAATCAATTAAAAAAAGCCGAGAAAATCGTGAAA
GGGGAAGCCCCTGAAAAAAGAAACTGGTTTCAAAGCAAAATAGAACGAGAAATGTCGCGA
GCTGAAAGAATGCTTGGGTCACATTCCAAAGTACCGAAGAAATTTAAAAAACCCAGCGGC
AAAAAAGGTCCATCAGCACCGACAACAGCTGATGCAAGGGTCGAAGTCGAATTACGAAAA
ACAAGGGAATTTCAAAAACGGCAGTTGAAGAGGAATCGCAAAGAAAAGCGCACTCGCGCA
TGTGCGGAACCGATTGCTAAGGTGCAGAATGTCGTCAAATCACGGCCGAAAAAGAAGAGT
TCGTTTGATGCAGAACTCACTAACACAAGCAAGAGGAAAAACGCGAAACATAGAAATATA
AAACAACGC
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[153-367] 4.16E-66 - T[307-514] 4.82E-47 |
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[160-188] 11.305 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[179-380] 4.9E-58 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[184-354] 2.0E-46 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[191-365] 30.918 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[311-319] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[376-539] 20.527 |
| CDD |
Helicase_C (IPR001650) - T[381-508] 3.08381E-31 |
| Pfam |
Helicase_C (IPR001650) - T[394-500] 1.6E-26 |
| SMART |
Helicase_C (IPR001650) - T[419-500] 2.5E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX27_HUMAN | 54.096 % | 695 | 0 |
| DDX47_HUMAN | 41.274 % | 275 | 3.29E-85 |
| DDX54_HUMAN | 39.623 % | 240 | 2.69E-68 |
