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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S9...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S90.g02961.01.t

Possible name(s)

DDX27; DDX47; DDX49

Location

S90 [247,668 / 253,383]

Sequences

Amino acid sequence

Length: 592

>Phmamm.CG.MTP2014.S90.g02961.01.p
MTDLILTIENEEDLTIEPEGSDSDEEITIVSKKQRTQKKLEKKGFNPDFQFEDDGFYETK
WTLESALHNALKQKPISHEKPEDVDDLSDQIEDENEVENVGKIKTDKINLINRKRKRNAN
AEEDDSNLPVPLAEIQDSSGGDKNMSWDPTLGFQEMNLSRPLLKSISEINYVTPTPIQQA
AIPVGLLGRDISACAATGTGKTAAFMLPVLERLLYRPQSSAFTRVLCLVPTRELAVQVYS
VTQQLAQHSSIRICLAAGGLDIKTQEAALRQGPDIVIATPGRLIDHLHNTPSFDLHLVEI
LILDEADRMLDEFFEDQMNEIIKLCSHQRQTMLFSATMSEQVQELAAVSLKNPVKIFVNS
NTDVAPYLKQEFIRIRPNREGDREAIVAALCSRSFISNVLVFTQTKKQAHRMHIVLGLLG
LKAGELHGDLSQTQRLEGLRRFKNEDVDILVCTDLAARGLDIENVKTVINLTMPNTHQHY
VHRVGRTARAGKSGRSVSLVGESERKLLKEIVKFAKNQVKSRVVPAEVVNKFADKLKLLE
NEVGEVMQMEAQEKTLLAQENQLKKAEKIVKGEAPEKRNWFQSKIEREMSRG

Nucleotide sequence

Length: 1,779

>Phmamm.CG.MTP2014.S90.g02961.01.t
ATGACTGATTTAATACTCACCATAGAAAACGAAGAGGATTTAACCATAGAACCTGAGGGC
AGTGACTCAGATGAAGAGATTACCATTGTCAGCAAAAAGCAAAGGACACAAAAAAAGTTA
GAAAAAAAAGGATTTAATCCTGACTTTCAATTTGAAGATGATGGTTTTTATGAAACAAAG
TGGACCTTAGAATCAGCACTGCACAATGCTTTAAAGCAGAAGCCTATTTCCCATGAAAAG
CCTGAAGATGTTGATGACTTATCTGATCAAATAGAGGATGAAAATGAGGTTGAAAATGTT
GGCAAAATAAAAACTGACAAAATAAACCTCATCAATCGGAAAAGAAAAAGAAATGCTAAT
GCAGAAGAAGATGACTCTAATTTACCTGTTCCACTTGCTGAAATACAAGATAGCAGTGGT
GGTGATAAAAACATGTCATGGGACCCGACTTTGGGTTTTCAGGAAATGAACCTTTCCAGA
CCCTTGTTAAAATCCATCAGTGAAATAAACTATGTCACACCAACCCCTATTCAGCAAGCA
GCAATACCTGTTGGTTTGCTTGGCAGAGATATATCAGCTTGTGCAGCAACTGGGACAGGT
AAAACAGCTGCTTTTATGTTACCTGTCCTGGAACGACTTCTCTACCGTCCACAATCATCA
GCCTTTACAAGAGTCCTGTGTCTTGTTCCTACCAGAGAACTTGCAGTTCAAGTGTATTCT
GTAACCCAACAACTTGCACAGCATAGCTCAATTAGAATATGTCTTGCTGCGGGTGGTCTT
GATATCAAAACACAGGAAGCAGCACTACGACAGGGGCCAGATATTGTCATTGCCACACCG
GGTCGTTTAATTGATCATTTGCACAACACACCTTCATTTGACCTCCATCTTGTTGAAATC
CTCATTCTTGATGAGGCTGATAGAATGCTTGATGAGTTTTTTGAAGACCAGATGAATGAA
ATCATCAAACTATGTTCCCACCAAAGACAGACAATGTTATTTTCTGCCACAATGTCAGAA
CAGGTACAAGAACTTGCTGCAGTTTCGTTAAAAAATCCGGTAAAAATATTTGTGAACAGC
AACACTGATGTGGCACCGTACCTGAAACAAGAGTTCATACGAATTCGACCAAACAGAGAA
GGAGATCGAGAGGCTATTGTTGCAGCTCTTTGCAGCAGATCTTTCATAAGCAATGTGTTG
GTGTTCACTCAAACAAAAAAGCAAGCACACAGAATGCATATTGTTCTTGGATTACTTGGT
TTAAAGGCTGGAGAACTTCATGGGGATTTATCCCAAACTCAACGTCTTGAAGGTTTACGG
CGATTTAAGAACGAAGACGTTGACATTCTTGTGTGTACAGATCTTGCGGCGCGTGGACTG
GATATCGAAAACGTTAAAACAGTTATCAATTTAACGATGCCAAACACGCATCAGCATTAC
GTACATCGCGTTGGGCGTACTGCTAGAGCTGGAAAAAGTGGGCGATCTGTTTCGTTGGTG
GGCGAAAGCGAGCGTAAACTCCTAAAGGAAATTGTGAAGTTTGCAAAAAATCAAGTTAAG
AGTCGTGTCGTTCCTGCAGAGGTTGTCAACAAATTTGCCGACAAACTGAAGCTGCTTGAG
AACGAAGTGGGCGAAGTGATGCAAATGGAAGCACAGGAGAAAACGCTTCTTGCACAGGAA
AATCAATTAAAAAAAGCCGAGAAAATCGTGAAAGGGGAAGCCCCTGAAAAAAGAAACTGG
TTTCAAAGCAAAATAGAACGAGAAATGTCGCGAGGTTAA

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[144-358] 2.8E-66 - T[298-505] 3.38E-47
ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[151-179] 11.305
SMART
Helicase_ATP-bd (IPR014001) - T[170-371] 4.9E-58
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[175-345] 1.5E-46
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[182-356] 30.918
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[302-310] .
ProSiteProfiles
Helicase_C (IPR001650) - T[367-530] 20.527
CDD
Helicase_C (IPR001650) - T[372-499] 1.29371E-31
Pfam
Helicase_C (IPR001650) - T[385-491] 1.2E-26
SMART
Helicase_C (IPR001650) - T[410-491] 2.5E-27

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX27_HUMAN 56 % 672 0
DDX47_HUMAN 41.274 % 275 3.28E-86
DDX49_HUMAN 35.405 % 229 3.09E-68