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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.L172.2.v1....'
  2. Transcript 'Harore.CG.MTP2014.S3...'
  3. Transcript 'KH2012:KH.L9.23.v1.A...'
  4. EST 'AHC0AAA222YF06_RM1'
  5. Transcript 'Phmamm.CG.MTP2014.S8...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S869.g12491.01.t

Possible name(s)

COL17A1; COL28A1; COL3A1

Location

S869 [35,813 / 40,246]

Sequences

Amino acid sequence

Length: 265

>Phmamm.CG.MTP2014.S869.g12491.01.p
MGTNNNTMNVSDVSDSEALHSCYTCEHSGTKKSYCVKSNRQKNRQRGRLCAKWPCFCLIA
LSIICAVMAIFSVFIYIQLSQEINQLKTNFEVLQKRCGTNTNLQVVEGSLAKLVGETKRN
ENSVSFGATPKVGEKVTRPRRHDGHPHDGFHTHGRDGRDGRDGANGAMGPPGPPGPPGLP
GEGVIGPLGPVGPPGPQGLPGLPGIAGPPGQSVSMSLIHLQGDGSSNVPSNSHGTLNHWS
RTTWSSGDDFRYFQHNGTVKVLKSG

Nucleotide sequence

Length: 915

>Phmamm.CG.MTP2014.S869.g12491.01.t
TTTTTGATTTACTAATTTGTTTCCAAGAACCACGGAAATGTTATGAAGACAACTGGCAAC
TGCTAAATACACTCAACGATCCTTAATCTTCAAAAATATTAAAGTCATCCTGCTTTACTA
ATGGGAACCAACAACAATACGATGAATGTGTCGGACGTTAGTGATTCGGAAGCACTACAT
TCATGTTACACATGTGAACACAGCGGAACAAAAAAGTCATACTGTGTCAAATCAAACAGA
CAGAAAAACAGGCAAAGAGGAAGGTTATGTGCAAAATGGCCTTGTTTCTGTCTTATTGCC
CTTTCTATTATTTGTGCTGTGATGGCTATATTCTCTGTGTTCATCTATATTCAACTTTCC
CAAGAAATTAACCAATTGAAGACAAACTTTGAGGTTCTACAAAAACGTTGCGGTACAAAT
ACAAATCTTCAAGTGGTTGAGGGAAGTCTTGCGAAACTAGTCGGTGAAACGAAAAGAAAT
GAGAATTCTGTATCATTTGGTGCAACGCCAAAAGTCGGCGAGAAAGTTACTCGACCACGA
CGCCACGACGGTCACCCACATGATGGATTCCATACCCATGGCCGAGACGGTAGAGACGGC
CGGGACGGTGCCAACGGAGCAATGGGACCACCTGGTCCGCCTGGCCCACCGGGATTGCCA
GGTGAAGGAGTAATTGGTCCGCTTGGTCCAGTAGGACCGCCTGGACCACAGGGACTGCCG
GGGTTACCTGGGATTGCTGGACCACCTGGACAAAGTGTTTCCATGTCTCTCATTCATTTG
CAAGGCGATGGGTCGTCCAACGTCCCATCAAACAGTCATGGTACATTAAACCATTGGAGT
AGGACAACTTGGAGTTCTGGTGACGACTTTCGATATTTCCAACACAATGGAACCGTAAAA
GTCCTAAAATCTGGG

InterProScan

Pfam
Collagen (IPR008160) - T[154-211] 2.2E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value