Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 716

>Phmamm.CG.MTP2014.S854.g12381.01.p
MTDDITLNISSSVNVQPRKYRNHHVRGIVSRKRRIEERRKLKKRILKFGQLETEKSDAGH
QMITKDESKVPSLKTKEETVTKVTRPIKRDNHTQMVKTKSIFSGNPDIPELDLPKPAPRK
VKKVTPINKFIDLDIHPGLKSYIVEKMELEQMTPVQAAALPVLLEGQDALIRSQTGSGKT
LAYALSVIQTLQEIKPEVTRQNGPMAIVLTPTRELAQQSYAVFQQLTLPIRRLVATWLVG
GQNRKSEKARIRKGVNIIVSTPGRFVDHLENTSCLNLENIKWLVFDEADRLLDMGFQKDI
NKVLKEIKKQTETKPQTVLLSATLNRGVENLVDLTLTSPAKVDVNDAKGLKSDSSNFVDP
STGLEVEKVSLPEKLQQHVVVVPSKLRLISLFSFIMEKVSSAKILVFLSCRDSVEFHFHI
LKLFLEHHRQTAWAKNVFQLHGGMAQKDRTETMIKFKKSKLSVLLCTDVAARGLDIPRVD
WVVQYTSPGSPVDYIHRVGRTARAGQKGNAVLFLTPVEVPYVKLLTSYDIDVSELKLDQL
LTGMLSTKSKNFQENIRIQMAKEKAAETHKTFESFIQEDKNLKELAVKAFVSFIRAYATY
PLALKHIFHVKNLHTGHVAKSFALQDTPGEALKSLQNTVGQRAVQQMQFKRKQTNNNSKN
NTEQLQKQPDSKKTAPAKSKVPPKATKRHPIVAKFDLMSEFSSGMEGVTVQKKMKV

Nucleotide sequence

Length: 2,151

>Phmamm.CG.MTP2014.S854.g12381.01.t
ATGACTGATGACATTACTTTAAATATTTCCTCATCTGTTAATGTTCAGCCTCGTAAATAT
CGCAATCATCATGTGAGAGGAATTGTCAGCAGAAAAAGGCGCATTGAAGAGCGGAGAAAA
CTTAAAAAGAGAATACTTAAGTTTGGACAACTTGAAACAGAAAAATCAGATGCTGGACAT
CAAATGATAACAAAGGATGAAAGTAAGGTACCTTCTCTGAAAACAAAAGAGGAAACCGTA
ACTAAAGTTACAAGACCAATAAAGCGAGATAACCATACTCAGATGGTAAAAACAAAATCA
ATATTTTCTGGTAACCCTGATATACCAGAATTGGACTTGCCAAAACCAGCTCCAAGAAAA
GTCAAGAAAGTTACACCCATTAACAAGTTTATAGACTTAGATATACATCCTGGCTTAAAA
TCATACATCGTTGAAAAAATGGAGCTTGAACAAATGACACCTGTACAAGCTGCTGCCCTT
CCAGTTTTGTTAGAAGGTCAGGATGCTTTAATAAGATCACAGACAGGCTCTGGAAAAACT
CTGGCATATGCATTGTCTGTTATACAAACTTTACAGGAAATCAAACCTGAAGTTACAAGA
CAAAATGGACCAATGGCAATAGTACTCACACCAACAAGAGAACTTGCACAGCAAAGTTAT
GCAGTTTTTCAACAACTTACTTTACCTATTCGTAGGCTGGTTGCAACTTGGCTTGTGGGT
GGACAGAATCGTAAATCAGAGAAGGCTCGTATTAGAAAAGGTGTTAATATTATAGTTTCA
ACACCAGGAAGATTTGTGGATCATCTTGAAAATACATCCTGCCTTAATCTTGAAAACATA
AAGTGGCTCGTTTTCGATGAAGCTGACAGGCTACTTGATATGGGATTTCAAAAAGACATT
AATAAAGTTCTGAAGGAAATAAAGAAACAGACAGAAACCAAACCACAAACTGTTTTACTT
TCTGCCACCCTAAACAGGGGTGTAGAAAATTTGGTTGATTTAACTCTAACAAGTCCAGCA
AAAGTAGATGTTAATGATGCAAAGGGATTAAAGTCTGACAGTTCAAATTTTGTTGATCCT
TCAACTGGCCTAGAAGTTGAAAAGGTATCTTTACCAGAAAAACTGCAGCAACATGTTGTT
GTGGTCCCAAGTAAACTCAGGTTAATTTCTCTTTTTTCTTTTATCATGGAAAAAGTATCT
TCAGCAAAGATTCTTGTATTTCTTTCTTGTCGAGATTCCGTTGAATTCCATTTCCACATT
CTCAAACTATTTTTGGAGCATCATCGCCAAACTGCTTGGGCCAAAAATGTTTTTCAGCTG
CATGGGGGAATGGCACAGAAGGACAGGACTGAAACCATGATAAAGTTCAAGAAATCAAAA
CTAAGTGTGCTACTGTGCACAGATGTGGCTGCAAGAGGTCTTGACATTCCCAGGGTAGAC
TGGGTGGTTCAGTACACCAGTCCAGGTAGCCCAGTTGACTACATACATAGAGTTGGACGA
ACTGCCCGTGCTGGACAAAAAGGAAATGCGGTTTTGTTCTTAACTCCTGTTGAAGTTCCT
TATGTAAAGTTACTCACAAGCTATGATATTGATGTCAGTGAGCTTAAGTTGGATCAACTT
CTTACTGGTATGCTGTCCACAAAATCTAAAAACTTTCAGGAAAATATCAGGATTCAAATG
GCAAAGGAAAAAGCTGCTGAAACACACAAAACTTTTGAGAGCTTTATACAGGAGGACAAG
AATCTGAAAGAACTTGCTGTTAAAGCTTTTGTATCATTTATAAGAGCCTATGCTACCTAT
CCTCTTGCTCTGAAACATATTTTTCATGTGAAAAACCTTCATACAGGACATGTTGCCAAA
AGCTTTGCACTTCAGGATACACCTGGGGAAGCACTGAAAAGTCTGCAGAATACAGTGGGA
CAACGGGCGGTACAACAGATGCAATTTAAAAGAAAGCAAACTAACAATAACAGCAAAAAC
AACACTGAGCAACTGCAAAAACAACCAGACTCTAAAAAAACAGCTCCTGCTAAAAGCAAA
GTCCCGCCCAAGGCAACCAAACGACATCCAATTGTTGCCAAGTTTGACTTGATGTCAGAG
TTCAGCAGCGGTATGGAGGGAGTCACAGTACAGAAAAAGATGAAAGTTTAA

InterProScan

ProSiteProfiles	RNA_helicase_DEAD_Q_motif (IPR014014) - T[128-157] 7.443
SMART	Helicase_ATP-bd (IPR014001) - T[148-367] 5.2E-49
Pfam	DEAD/DEAH_box_helicase_dom (IPR011545) - T[153-331] 3.9E-50
ProSiteProfiles	Helicase_ATP-bd (IPR014001) - T[160-342] 31.025
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[202-523] 1.11E-63
ProSitePatterns	RNA-helicase_DEAD-box_CS (IPR000629) - T[284-292] .
ProSiteProfiles	Helicase_C (IPR001650) - T[374-564] 20.856
CDD	Helicase_C (IPR001650) - T[374-513] 2.94588E-33
Pfam	Helicase_C (IPR001650) - T[395-505] 3.8E-25
SMART	Helicase_C (IPR001650) - T[419-505] 1.2E-26
SMART	DUF4217 (IPR025313) - T[567-632] 1.2E-27
Pfam	DUF4217 (IPR025313) - T[570-628] 1.8E-19