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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S8...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S825.g12205.01.t

Possible name(s)

NPTX1; NPTX2; NPTXR

Location

S825 [55,587 / 61,811]

Sequences

Amino acid sequence

Length: 539

>Phmamm.CG.MTP2014.S825.g12205.01.p
MIQVIVTLLFMTSQTVFGLQESQHNVLKIPDPSTFLTSQSLTSQDLAWTNDVIIKPLYDV
TLCVWIKSFDLTKTGTIFSYVTTHKKLEFSLVGLKNSDSANYDVYLVAKGRRSSRPINLR
VDDVTWHYVCVTYNRKGLWVVYMDSEEVGSGFDLKSSEPILDNGILYVGSSGPDTGQEYS
TFTGKITGLKIWDKILTEKEQEIWAAGFCKESPQNSGIPLINLRQRKVPTADYEWNPSLI
STRWPASFSKNEDLCGGDITVECTHNRMLISVDASHLTSYNIEQQELHLNEGNCTPTARG
STGGHYVFDVTDLSSCGTKRTVDREVIYHNRVTNMATTIQVVFFDYLFSAGVTCRFPIDL
TVSSQLIPPSDNHAISRTIIRNPKTNNEDLEAVVLLFRDNSFSEALTENPRLAPTDDLYV
GVLLQESTKAKDAIPTNEIPPPTNVTDDVKVVVDECFVRSIRQRKKVISDQGCWSSAPDI
SVLENGRRSQARYKIPSRSLSFTNGPVFLQCKVHPCMGSSCAPSCGSDGYSNMENLLTP

Nucleotide sequence

Length: 1,620

>Phmamm.CG.MTP2014.S825.g12205.01.t
ATGATTCAGGTCATAGTCACATTATTGTTTATGACATCACAAACCGTATTCGGATTACAA
GAATCACAACATAATGTTCTAAAAATTCCCGATCCATCCACCTTTCTTACGTCACAATCG
CTAACCTCGCAGGATTTAGCTTGGACGAATGATGTCATAATCAAGCCTCTCTATGATGTC
ACACTTTGCGTTTGGATAAAGTCGTTCGATTTAACGAAAACTGGAACAATATTTTCTTAC
GTCACAACCCACAAGAAGCTCGAGTTCTCATTGGTCGGTTTGAAAAATTCAGACAGCGCC
AACTATGACGTATATTTGGTGGCAAAAGGTCGAAGGTCATCACGGCCGATCAACTTGCGA
GTTGATGACGTAACATGGCATTACGTATGTGTGACGTATAACCGGAAGGGATTGTGGGTA
GTTTACATGGATTCAGAGGAAGTCGGGTCCGGCTTTGATTTGAAGAGTTCGGAACCCATA
CTAGACAATGGAATTTTGTACGTCGGTTCGTCGGGTCCGGACACGGGTCAGGAATATTCA
ACTTTCACGGGAAAAATCACGGGATTAAAAATTTGGGACAAAATTTTGACGGAAAAAGAG
CAGGAAATTTGGGCGGCGGGATTTTGCAAAGAATCCCCACAAAATTCGGGGATTCCCCTG
ATAAACCTGAGGCAGCGAAAAGTCCCGACGGCAGATTATGAATGGAATCCAAGTTTGATC
TCCACAAGGTGGCCGGCGAGCTTCAGTAAAAACGAAGACCTCTGTGGTGGAGACATCACG
GTTGAGTGCACACACAATCGCATGCTTATTTCAGTTGATGCGTCACACCTGACGTCATAC
AACATCGAACAGCAAGAACTTCATTTGAACGAGGGAAACTGCACACCCACCGCTAGAGGG
AGCACTGGTGGTCATTACGTGTTTGACGTCACAGATCTCAGCTCATGCGGAACAAAGCGG
ACTGTAGACCGCGAAGTAATTTACCACAATCGTGTCACCAATATGGCCACAACGATTCAA
GTGGTTTTCTTCGATTACCTTTTCTCTGCTGGAGTCACGTGTCGTTTCCCCATCGACCTA
ACTGTGAGCAGTCAACTGATCCCGCCAAGCGACAACCATGCAATATCGCGCACAATTATT
CGAAACCCGAAAACAAACAATGAAGATCTCGAAGCGGTAGTTTTATTGTTTCGTGACAAT
TCGTTTTCGGAAGCTCTCACCGAAAATCCTCGCCTCGCACCAACAGATGATCTTTATGTT
GGAGTTCTTCTGCAGGAAAGCACCAAAGCCAAAGATGCGATCCCAACCAATGAAATCCCC
CCTCCTACAAACGTCACTGATGACGTAAAGGTGGTTGTGGATGAGTGCTTCGTCAGGTCG
ATCAGACAACGAAAGAAGGTTATATCGGATCAGGGATGTTGGTCATCTGCACCCGACATT
TCTGTGCTTGAGAACGGACGTCGATCCCAGGCCAGGTACAAGATCCCGTCCAGATCTCTC
TCCTTCACCAACGGACCTGTTTTCCTGCAATGCAAAGTTCATCCGTGCATGGGAAGCTCG
TGTGCGCCATCTTGTGGATCTGACGGGTATTCAAATATGGAAAATCTACTAACACCGTAA

InterProScan

SMART
Pentraxin-related (IPR001759) - T[19-241] 0.0011
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[44-200] 1.49E-21
SMART
ZP_dom (IPR001507) - T[262-528] 4.1E-6
ProSiteProfiles
ZP_dom (IPR001507) - T[262-532] 20.195

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value