- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S792.g11980.01.t
Possible name(s)
LHCGR; RXFP1; TSHR
Gene model
Location
S792 [52,398 / 61,647]
Amino acid sequence
Length: 739
>Phmamm.CG.MTP2014.S792.g11980.01.p
MTCNLPQVLLNDGIKDCDDGSDLCYDPVTNITALYRDIRANSNFNTSRCFQCLDNSMIVS
SQSVCDGVIDCPDLSDECLCEGELPKVCVRIQSVVPTQIGRNCTIGQVKCGDGHCIDKTS
VCNGILDCNDGLDEEESYCGGTKPCMNATAGETCRCSLLAKQTCKQTVATYCDDQMECVM
LARGTTFDQPAEDECAGMCHVDKIAAGSHNASDTDCLPPTPRTKPFKCRGIGKRDLVSVQ
KTINASQVCDGIPDCKKPFSDERRCRSRYKCPTASGAISISTREICDYVINCDDQSDEIN
CQDNRFYCENKQPLFVRKQQLFNGVPDCSDWSDECPSVRNRSDVTSFSSRYELIGNPVLR
VLVWIMGFLAVMGNSANNLLVLNLAVADFLMGMYLLILGAVGVVYSGRYCSLDLYWRTSS
RCTALGILVVLSSEASVMTMVLLTSFRLYAVLNPFRARTKPKIKVVVLLILLAWGISFVL
ALVPISETFQVTFTDGALLEDNLFFRRAVVKFDTFQRFVTRLATFYPKTNTSSGAASESL
EHIGQLTSWYQLRKVLDQSNLTIPNLNMGRYFGYYSDHSVCVPRIFVTQRDNTWTFSLGV
LCFNLMSFLYVAVAYIYIYCRSTEVEKIASENRSAKTSKRSQEMQKKIFRLIVTDFCCWV
PVSIMAFVNFSGVKVPSDAYAFSAILLLPINSALNPIVYSHVWTIAYDKIRKKGKAKATS
SVTNSSSSRPDTKVESTKL
Nucleotide sequence
Length: 2,220
>Phmamm.CG.MTP2014.S792.g11980.01.t
ATGACATGCAATCTGCCTCAAGTTCTGCTCAATGATGGAATCAAAGATTGCGACGATGGC
TCAGATTTGTGTTACGACCCAGTAACGAATATCACTGCATTGTATAGAGATATTCGCGCC
AACTCGAATTTTAACACCAGTCGATGCTTTCAGTGCTTGGACAATTCAATGATTGTGTCG
TCACAGAGCGTGTGTGATGGCGTCATCGATTGTCCAGATTTGAGCGATGAATGTCTCTGC
GAAGGGGAACTCCCAAAAGTGTGCGTCCGGATTCAAAGTGTCGTACCAACGCAAATCGGA
AGGAATTGTACAATTGGTCAAGTGAAGTGTGGGGATGGACACTGCATCGATAAAACGTCG
GTGTGTAATGGAATTCTGGATTGCAACGATGGTTTGGACGAGGAAGAAAGTTACTGCGGG
GGAACGAAACCATGCATGAACGCTACTGCTGGGGAGACTTGTCGGTGCTCACTGCTGGCC
AAGCAGACCTGTAAGCAGACAGTGGCAACGTATTGTGATGATCAAATGGAGTGTGTCATG
TTAGCACGTGGCACAACATTCGATCAACCAGCAGAAGACGAATGCGCGGGAATGTGTCAC
GTGGACAAAATAGCAGCTGGCTCCCACAATGCATCGGACACCGACTGCTTGCCGCCAACA
CCGCGAACGAAACCGTTCAAGTGCAGAGGGATAGGGAAAAGGGATTTGGTTTCTGTTCAG
AAAACCATCAACGCTTCCCAAGTATGCGACGGTATTCCCGATTGCAAAAAGCCGTTTTCG
GACGAACGAAGATGCAGATCTAGATACAAATGCCCAACCGCTAGTGGCGCTATTTCCATT
TCTACTAGAGAGATCTGCGATTACGTAATCAACTGTGACGATCAAAGTGACGAAATCAAT
TGCCAAGACAACAGGTTTTATTGTGAAAACAAACAGCCATTGTTTGTTAGAAAACAGCAG
TTATTCAACGGAGTTCCTGATTGTTCGGACTGGAGTGACGAGTGCCCATCGGTGCGCAAC
CGGTCTGACGTCACTTCGTTTTCGTCACGTTACGAACTGATAGGAAATCCGGTGCTGCGT
GTACTGGTCTGGATTATGGGATTTCTAGCTGTAATGGGAAACTCGGCCAACAATCTTCTC
GTACTGAACCTGGCAGTTGCCGATTTCCTGATGGGAATGTATCTCCTAATTCTCGGAGCA
GTCGGAGTTGTCTACTCCGGAAGATACTGCTCCTTGGATCTCTACTGGAGGACAAGCTCC
CGCTGCACGGCGCTAGGGATCCTCGTTGTTCTTTCCAGCGAAGCGTCAGTGATGACGATG
GTGTTGCTTACGTCATTTCGACTTTATGCTGTCTTAAACCCGTTCAGGGCCAGGACTAAA
CCGAAAATCAAAGTAGTGGTGTTACTCATACTGCTCGCTTGGGGCATCAGCTTCGTACTT
GCGCTCGTTCCAATCTCCGAAACTTTTCAAGTCACATTTACTGACGGAGCTTTGCTTGAA
GACAACCTCTTCTTCCGTCGGGCGGTGGTTAAGTTTGACACATTCCAAAGGTTCGTTACG
CGACTTGCAACTTTTTATCCAAAAACAAACACAAGTTCAGGAGCAGCAAGCGAATCACTC
GAGCACATTGGTCAGCTGACTTCCTGGTATCAGCTGAGGAAAGTTCTAGACCAATCAAAT
CTCACGATTCCTAATCTAAACATGGGTCGGTATTTTGGATACTACAGTGATCATAGTGTC
TGTGTTCCTCGAATATTCGTCACACAACGGGACAACACGTGGACTTTTTCGCTGGGAGTG
TTGTGTTTCAACCTAATGTCGTTTCTCTACGTTGCTGTGGCTTACATTTACATTTACTGT
CGATCAACTGAGGTGGAAAAGATTGCGAGTGAAAATAGAAGTGCAAAGACATCGAAACGG
AGTCAAGAAATGCAGAAGAAAATCTTCCGCCTGATTGTGACCGACTTCTGCTGTTGGGTT
CCTGTTTCGATCATGGCCTTCGTCAACTTCAGTGGGGTTAAGGTTCCATCTGATGCATAT
GCATTCTCGGCTATCCTGTTGCTTCCAATCAACAGCGCTCTTAACCCAATCGTGTACTCG
CATGTGTGGACTATTGCGTACGACAAAATTAGGAAAAAGGGCAAAGCAAAGGCGACATCC
AGTGTTACTAACAGCAGTAGCAGTAGACCTGATACAAAGGTTGAAAGCACAAAACTATAA
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[2-23] 2.4E-18 - T[56-77] 2.4E-18 - T[113-134] 2.4E-18 - T[240-261] 2.4E-18 - T[277-298] 2.4E-18 - T[313-334] 2.4E-18 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[45-82] 0.029 - T[102-141] 2.6E-8 - T[222-267] 0.17 - T[300-337] 0.1 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[48-80] 3.27E-5 - T[101-138] 4.84E-9 - T[269-311] 8.38E-5 - T[300-337] 2.36E-5 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[50-80] 0.00164025 - T[103-135] 8.71376E-8 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[64-728] 1.7E-90 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[102-140] 11.363 - T[254-302] 8.538 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[102-136] 2.3E-6 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[115-139] . |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[355-699] 23.561 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[375-486] 6.3E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSHR_HUMAN | 31.757 % | 84 | 1.32E-16 |
| LSHR_HUMAN | 30.405 % | 86.3 | 2.4E-17 |