Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S761.g11773.01.t

Possible name(s)

FGF17; FGF18; FGF8

Gene model

Phmamm.CG.MTP2014.S761.g11773

Location

S761 [27,872 / 45,175]

Sequences

Amino acid sequence

Length: 429

>Phmamm.CG.MTP2014.S761.g11773.01.p
CGNYLFKTSKKRMNSIKQNLFSIRSIIYILKTAFIIFLLFPPTLQKRRRKSIDDDVQRHI
NRQIERGFDGISSSITRHYEIYSRITGKRVQMKGRKVDANGKVGSKNAKFAFHSYMFGGQ
IMIQSVANGRYLCMKKSGRLTGRRSVKNRSGINKYCVFTEQMTEGYYDVFRNFQRPSWFL
GFKANGRPKRGDRTAMGQQEVVLLKIAQDQSKTTETGGMWLDLEQRIREAFIKGTIARPA
QVNALRSRQQTIEFTNDGGKTTQTLRNVMSDAPGKGDFETEIEKRRNITSFLTDGSDITL
PPQESVSTATAWHSRATRKRDRARKNRKRNKKNRKNRTAKPTPGSSNIDSSVSVSDRAES
NASHDAAQNFVADYRTHRPQVVVDPPTIPSVLKIRRTTVSKRTRRKRTKSPRNHKRARKN
KKSRKNGKT

Nucleotide sequence

Length: 1,894

>Phmamm.CG.MTP2014.S761.g11773.01.t
CTGCGGGAATTACTTGTTCAAAACGTCAAAAAAGAGAATGAACAGCATAAAGCAAAATTT
GTTTTCTATCAGAAGTATCATATATATATTAAAAACCGCGTTTATCATATTTCTTCTATT
TCCGCCAACGTTACAAAAGCGCAGAAGAAAAAGCATCGACGATGACGTACAACGACACAT
AAACCGACAAATTGAACGTGGATTTGACGGCATTAGTTCATCCATCACTCGCCACTATGA
GATTTATTCGCGTATAACCGGAAAACGAGTCCAAATGAAAGGACGAAAAGTGGACGCAAA
TGGCAAAGTTGGAAGCAAAAATGCAAAATTCGCCTTTCACTCTTACATGTTCGGAGGCCA
GATAATGATTCAAAGCGTAGCTAACGGACGTTACTTGTGCATGAAGAAAAGCGGAAGACT
GACTGGACGAAGGAGTGTTAAGAATCGATCAGGGATCAACAAATACTGTGTCTTCACGGA
GCAAATGACTGAGGGTTATTACGACGTTTTCCGTAACTTCCAACGACCGAGTTGGTTTCT
CGGTTTCAAAGCAAACGGAAGACCAAAGCGTGGGGACAGAACCGCGATGGGACAACAAGA
AGTCGTGCTACTAAAAATCGCTCAAGACCAGTCCAAAACCACCGAAACCGGAGGCATGTG
GCTCGATTTGGAGCAACGGATTCGTGAAGCTTTTATAAAGGGAACCATTGCTCGGCCTGC
TCAGGTCAATGCTTTGCGTTCACGACAGCAGACCATAGAGTTTACTAACGACGGCGGAAA
AACTACGCAAACGTTACGAAACGTTATGTCTGACGCACCCGGCAAAGGCGACTTCGAAAC
TGAAATCGAAAAACGCCGGAACATTACTTCATTCCTCACCGACGGAAGTGACATCACGCT
GCCACCGCAGGAGTCCGTCTCTACCGCCACCGCGTGGCATTCTCGCGCCACCAGAAAACG
TGACCGCGCCAGGAAAAACCGTAAACGAAATAAGAAAAACCGTAAAAACCGGACAGCGAA
GCCTACACCAGGTTCTTCTAACATTGACTCTTCTGTCTCAGTCAGCGATCGGGCGGAATC
GAATGCTAGCCACGACGCTGCACAGAATTTTGTTGCCGACTACAGGACTCACAGGCCACA
GGTCGTTGTTGATCCTCCAACTATTCCCTCCGTGCTGAAAATTAGGCGGACGACGGTGTC
AAAACGCACAAGAAGAAAAAGGACAAAAAGTCCCAGGAACCACAAAAGAGCGCGTAAAAA
CAAGAAAAGTAGAAAAAACGGCAAAACGTGAAGCATTTTTATGTAAAAATTTGCGAAATG
CCTTAAATCCGTGCCTTGGAGATCTCACGAGTGGAAGGAGGTGCTCGAAAGCACGTATCG
AAAAGTTTCAAAATATAACAATTTCGCGAAGATTTCAATGTGTCTTGGTACTTTGCCCAG
CTGCTCAACACCCAAAACCCTGTCATCCGCCTTCAGTGATCTGTATTTTGTCCGCGCCTT
TCCAAAATGGCAGAAATTTACTTTTGCTCCCTTTTCTGTTTTCTTTCCTTAACGTGCAAT
ATATTTCCGTGACACCTTTGATGTTGAGTGTTGTCGTACGCCCTCGTGCTCTTCTTTACT
CTTTTTGTCAGTGACGTCATCAACATTACGTCACAACTCGCTGTCGATATATCCGCACTC
GGCGTGGTGTGTGATGGGATTTTACCATGGTTACAAATCGATAATATTTGTTTTTAATAG
ACGAGAAACACTCAAATAGTCAACGTTTTGTATGGAAAGCTCACTTTATACACAGAAAAT
TATTAAATTCGATTACAATACTATATTCCCGCGAAATATTACCAGCTACAGAAGAAGGAA
CGGAAATATTTGTGTCAAAATTTGTCAAAACAAA

InterProScan

PANTHER	Fibroblast_GF_fam (IPR002209) - T[26-366] 2.6E-43
SUPERFAMILY	IL1/FGF (IPR008996) - T[72-205] 1.14E-28
SMART	Fibroblast_GF_fam (IPR002209) - T[75-207] 4.2E-10
Pfam	Fibroblast_GF_fam (IPR002209) - T[77-202] 1.7E-27

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
FGF18_HUMAN	34.437 %	100	1.63E-24
FGF17_HUMAN	36.496 %	99	5.32E-24
FGF8_HUMAN	32.432 %	89.4	2.39E-20