- Transcript 'Phmamm.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S721.g11487.02.t
Possible name(s)
NR5A1; NR5A2; NR6A1
Gene model
Location
S721 [55,765 / 68,863]
Amino acid sequence
Length: 616
>Phmamm.CG.MTP2014.S721.g11487.02.p
PKSPPNQIYDSERKEDGKEVKSCLICGDKATGLHYGIISCEGCKGFFKRSICNKRVYRCT
RSKNCVMSRKQRNRCQFCRLLKCLQMGMNRKAIREDGMPGGRNKSIGPVQISDEEIERIL
SGKDFEEEEKQQQHQQQQHQMSMNMDHSGNPFPSLTHGSHPSFLPYLPPRAVNQNAANSI
NSSTASSPLLNGFRGPNVSSGMQGTRNLLVGANAQTQFVPPLAGVQLRDNPYYTGIPGYQ
LPPHLSQYTMQQSQMTKDRSPESASELTSGNLVEQLVMAEDVEALSSINVDQVPSEGPIS
KGQLFGFLCKVADEMLYRQIVWIKKLPFFDSISIKDHTTLLSTTWAEIILLAALCVHEEQ
LFGDLADITSRYVPDSEELSRFTDYEMEILERMTYLYQKFSHLGIDKEEYVIMKVINFLN
QDIKGLEEVDRVEDINKRYWYACQRFTEMRALERSVERRGLNGNAAANGAQRFRDLMLCL
PEIRFVAGKMLNTDVAKLPLLFKAILHTCKLQKVQSTQIAAAQLITSSPPPSPTSSPQTQ
RIGTIREDDKMAAAVTMLDLTHRQHEHHALGRHHGSSGSIGPPSTTSTASSGQIITSGSP
RSSHGRSSRDSTSESA
Nucleotide sequence
Length: 3,971
>Phmamm.CG.MTP2014.S721.g11487.02.t
CACCCAAATCCCCACCGAATCAGATTTACGATTCCGAACGAAAAGAAGACGGCAAGGAAG
TTAAGAGTTGTCTTATCTGCGGCGACAAAGCGACCGGGCTACATTACGGCATCATCTCGT
GCGAGGGATGCAAAGGATTTTTCAAGCGCAGCATATGCAACAAACGCGTCTACCGGTGTA
CGCGCAGCAAAAATTGCGTGATGTCGCGAAAACAGCGCAATCGTTGCCAGTTTTGTCGTC
TGCTAAAATGCCTGCAGATGGGAATGAATAGAAAAGCGATTCGAGAGGACGGTATGCCCG
GTGGACGCAACAAGAGCATTGGACCAGTTCAAATATCGGACGAGGAAATCGAGCGGATTC
TCTCCGGTAAGGATTTTGAAGAAGAGGAAAAGCAACAACAACATCAACAGCAACAACACC
AGATGTCAATGAACATGGATCACTCGGGCAATCCCTTCCCGTCCTTAACACACGGTAGCC
ATCCCAGCTTCTTGCCGTATCTCCCGCCTCGCGCGGTGAATCAAAACGCGGCAAATTCGA
TCAACTCTAGCACGGCATCGTCGCCATTGTTGAACGGTTTTCGCGGACCCAACGTTTCTT
CAGGCATGCAGGGGACACGCAACTTGTTGGTCGGTGCAAACGCTCAAACTCAATTCGTGC
CTCCTCTTGCTGGCGTTCAGTTAAGGGACAATCCGTACTATACCGGAATCCCCGGATATC
AACTACCTCCACACCTAAGCCAATATACAATGCAACAAAGCCAAATGACCAAAGATCGAT
CTCCAGAATCGGCATCTGAGTTAACAAGCGGCAACTTGGTGGAACAGCTGGTCATGGCTG
AAGACGTCGAAGCCCTGTCGTCGATAAACGTTGATCAGGTTCCAAGCGAAGGTCCAATCT
CTAAGGGTCAACTTTTCGGATTTCTATGCAAAGTGGCTGATGAGATGCTGTACAGGCAAA
TCGTTTGGATAAAAAAGCTTCCGTTCTTCGACAGCATCTCCATTAAAGATCACACAACAT
TGCTAAGCACGACGTGGGCTGAGATTATTTTGCTCGCTGCACTTTGTGTGCATGAGGAGC
AGTTGTTTGGCGATTTGGCCGATATCACATCAAGATATGTTCCGGACAGCGAGGAACTTT
CAAGGTTTACTGATTACGAAATGGAAATACTTGAGCGTATGACATATTTGTATCAGAAGT
TTTCGCATCTTGGTATCGACAAGGAGGAATACGTCATCATGAAAGTCATCAACTTTCTCA
ACCAAGACATTAAAGGACTTGAAGAAGTGGATCGCGTTGAGGACATCAACAAGCGATACT
GGTACGCGTGTCAGCGTTTTACCGAGATGCGAGCATTGGAGAGATCGGTCGAACGACGGG
GATTAAATGGTAACGCCGCTGCAAACGGAGCACAACGTTTTCGCGATCTCATGCTTTGTT
TGCCCGAGATTCGCTTTGTTGCCGGAAAGATGCTGAACACCGATGTTGCGAAGTTGCCAC
TACTATTCAAGGCAATATTGCATACTTGCAAGCTGCAGAAGGTGCAGTCCACTCAAATCG
CAGCGGCTCAGCTCATCACGTCGTCGCCTCCACCCTCGCCCACATCATCACCCCAGACAC
AGCGGATAGGCACTATACGCGAAGATGATAAAATGGCCGCCGCCGTCACCATGCTTGATC
TCACGCATCGTCAACATGAGCACCATGCTCTCGGGCGCCACCACGGCAGCAGCGGATCAA
TTGGACCACCCTCGACTACCTCTACTGCCTCCAGTGGGCAGATCATCACTTCAGGATCAC
CCAGATCCAGTCATGGGCGTAGCAGCCGTGACAGCACCTCAGAATCGGCATAAAGGCGAC
GTGATAACTTATCTGAGTATATACTGCGCACAAGTTTCCGTCTTTGCACTCAGTCGCCTG
GAACATCCAGCAGCACCCGCGCACAAGGCGGCACGCGATCGTTCGTGCGTGCTTGACGCT
TTCATATGCAAGGTCTTATTTCAACCAAGCGAAGCTCGCTTTTTCCGTCAACATATTTCT
ATCTCTAACCTCCAGAGCAAATCAGCAAGCCGCAGCCATAGCAGCATGACATGTACCTCG
GAAAAAAACACATGCTTCTTTTTCTACATATTTTGGTGGCGGTATCCTCGACAAGCCTGT
GCGGCCCGTATTCGTTACTGTGACAGCAAACAAAGACGTCTACCTCTTAGCCTACATGTG
CCTCGCCCGCTCCAACTAACCGCTTCACCTCCCACCCTAAAGCCTTAGCGCGCATTACAT
AAAAATATTATCATGAAAAAACAGTTTACGCGTTATTTTTCCGAAATACGCTGGTTTGTT
AAAACTTAAATGCCGATATGTTTCTCGTTTAAAGGACAACTTGTTTGCATAAAGACTGAG
CAAGGCACAGATTTATGCGTCGTGTTGTATTTATCAGCGCATTTCCACGTCTATTCTTCA
GGTAGAGGAGTCAATACTGTGTCCTGTAACTTCTTCACACGCGCGCTATACCAGCAAACC
ACGTCCGTTGTTCAATATCAACTGCAAGGGCCGATTTCCTGTAAAAAGTCATGTTTTTCG
TTTGTTTATTGTCACGTCTTCACTCAGGGCTTGTGGTGTGCAAGAATTCTCTTCGCGAAT
TAATTATCTAACTTTAGGTCTCTCGCTGTACATATACAGACTATAATATGCCACCTAAAG
ATTCTGGCGTCATGGCCACCAATTGTGCCGCGTTCTGTTGTGAATTACGCTAAAGCACCC
GTGGCCTATAATTCTTTGGGTGGGCGATATTCCGACTTACATTATTGTGTTATTCGCGCT
CGCATCCGATAAGTGTTGACACGAGAGTCCGTTTGCTATAGATAACGTACTTTGCTTGTG
TGGGAAAACGCCTTATTACTTTTTTTCGCTTCGTGCTGATTCCAGCCTTGTCCACATAAT
TCTATTTGATTCCGCGTGATAATCATCCCGTGCCGATCCCCTCGAAGAATATCAGCAGTT
TGATTTTTTGTTCGTTTCGTTTTTGTTATTGCCTTCCCACAAGTGCCGACTAGGGGTGTG
AATTTTGTGATGTTTAATTACCAACGCATGTTAAATTCCTATTAAAAATCGCCTTCCAGC
AGGTCCGCATTGTTAAGATTTAAACCTCTTCATCGTGGCGAAATCGGCCTAAAATTCAAA
CCTTCCTGTGAAAACCTCAATCTCTTCATAACGAAGCCTCAACAGGCCACCTCATTTTGT
ATGGTTTCTGTTTGCAAAAAAACTCTTTCTACCGACCACAGGCGCTTTTAAGCTGCGTTC
CATCGATCCATACTCGAAATTTGACCAAACCGTAAACAGCGTCGCAGTGCCCGACGCAAT
TGCAAGTTTTCTATGCCATGCATTGTCACCTCAGAGAAAACGCCTACAAGTGTCTTCAAT
AGTCGCAAATACCCAGCCTGTGTGTCCGACCAGCTCAGGTTTACTGATCGTCCTCGTAAC
GCCTATTATTTCATTTGTTCGTATATTTTTGTGTTATATCCTCCCTGTGTGTTTGCGCGT
AACCAATCAGCCGCCTGCTTCTGCGCTAGCGCTTGACTAATTTATCGCTCCCGCCCACAA
TACCTCAACTATATTATTAATTTTGTTATTCCGTTCTGGCTCTGCGGCCGAGCGCGGCGA
GCCACATCTTATATTGGCGCCTCGAAATCCTTTTTTGCCACGCTACCTCAAGACGGGCCG
CGAGTCTTTTGTTGTTTTGTGTGTTATTTTTCACTTGCTATTTTCTACAGCTTCGAATCA
GTTAAACCAAACAGCACGTTTCCGTTGTGGCCGCCAAGATTCCCTGTCCTTGTAGTCCCC
GAAATCATTGTTTATGTGTACCCAGAAGAAATCCCGGTTTATCGTGTATATGTGCGTGTG
TTGCTTGTTTCTGTGTGTGTGCGCCGAAGGCTCATATTTGTTAAGTTACAGTTAGTCGTT
TTGTTCACCCG
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[13-121] 7.6E-32 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[20-91] 1.9E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[20-95] 20.231 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[22-90] 7.8E-28 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[23-39] 3.6E-17 - T[39-54] 3.6E-17 - T[72-80] 3.6E-17 - T[80-88] 3.6E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[23-49] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[84-94] 1.7E-15 - T[311-332] 1.7E-15 - T[332-348] 1.7E-15 - T[403-418] 1.7E-15 - T[475-492] 1.7E-15 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[93-506] 3.28E-36 |
| ProSiteProfiles |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[268-516] 32.646 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[305-491] 1.3E-11 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[310-487] 6.5E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR6A1_HUMAN | 50.301 % | 473 | 1.07E-162 |
| NR5A2_HUMAN | 26.996 % | 157 | 1.93E-41 |
| STF1_HUMAN | 25.514 % | 137 | 9.64E-35 |