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- Transcript 'Phmamm.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S71.g02510.04.t
Possible name(s)
MYD88; SIGIRR; TLR3
Gene model
Location
S71 [257,302 / 259,628]
Amino acid sequence
Length: 414
>Phmamm.CG.MTP2014.S71.g02510.04.p
EEKKLQPEDLDEMASIQMQRKEMESFSSGYEKPPIDTPVECDSTNTDVAGQSSLGRRLAG
VQESGFDSGKSATSMPTLDASTHLHSPPPSYYNQPEGSWSSDQSTNLEKKDEVNLVATYG
MGRPSDDYMSMPLKKLRYETRRQLGLHLDPDRPTVPNWKSVADYLGFSNLQIQNFEQDRY
KTQAVLNECEVRQPNLTVGDLCKILQELGRLDVITDLQECFERDYKEPPLNSLVSARFDQ
SPAPSYRTVEPLQECAVSSTFYDHQQKTDIPPHLPEERYDAFVLYNIADKDFILKEFLPK
VEVDAQIKLFLPERDLTAGVQSYHAKLNTMIGRCSKLIIILSNEFLTSPESQWALNMGVS
LDPASRMQKIIPVIYKTITEPNILGGYNACDRTRVLEDSWFWNNVIKSLKRGRV
Nucleotide sequence
Length: 1,845
>Phmamm.CG.MTP2014.S71.g02510.04.t
CTGAGGAAAAGAAGTTACAACCAGAAGACTTAGACGAAATGGCTTCTATTCAAATGCAGC
GCAAAGAAATGGAAAGCTTTTCATCTGGATATGAAAAGCCTCCCATCGATACCCCAGTTG
AATGTGACAGCACAAACACCGATGTGGCTGGTCAGTCATCATTAGGCAGACGACTAGCTG
GTGTACAAGAAAGTGGTTTTGACAGTGGGAAGTCCGCAACGTCAATGCCAACATTAGATG
CAAGCACACACCTTCACAGTCCCCCACCATCATACTACAACCAACCAGAGGGTTCATGGA
GTTCTGACCAAAGCACCAACCTCGAAAAGAAAGATGAAGTAAACTTAGTTGCAACATATG
GAATGGGAAGACCATCTGATGACTACATGAGTATGCCTTTAAAGAAGTTAAGGTATGAAA
CACGGCGGCAGTTGGGTTTACATTTGGATCCAGACCGACCCACAGTTCCCAACTGGAAAT
CAGTGGCAGATTATTTAGGATTTAGCAATCTTCAGATTCAAAATTTTGAACAAGACAGAT
ACAAGACACAAGCTGTGCTAAATGAATGTGAAGTCAGGCAGCCAAATTTAACTGTTGGAG
ACCTTTGTAAAATTTTGCAAGAACTTGGTCGCCTAGATGTTATAACCGACCTGCAGGAGT
GTTTTGAGCGGGATTACAAAGAGCCCCCTCTGAATTCACTGGTTAGTGCTCGTTTTGATC
AGTCACCAGCCCCTTCATACAGAACTGTGGAACCACTCCAGGAATGTGCTGTGTCAAGTA
CATTTTATGATCATCAACAGAAAACTGACATTCCACCACACTTACCAGAAGAAAGATATG
ATGCCTTCGTGTTATACAACATAGCTGATAAAGATTTTATTCTTAAGGAGTTTTTACCCA
AAGTTGAAGTAGATGCACAGATAAAGCTGTTTTTGCCTGAACGTGATCTTACAGCTGGAG
TGCAGTCTTATCATGCCAAACTTAACACAATGATTGGCAGGTGTTCCAAACTGATCATTA
TACTATCCAATGAATTTCTGACAAGTCCGGAAAGCCAATGGGCTTTAAATATGGGTGTAA
GTCTTGATCCAGCCTCTCGCATGCAAAAAATCATTCCAGTCATTTACAAAACCATAACAG
AACCAAACATACTTGGAGGATACAATGCCTGTGACAGAACAAGAGTTTTGGAAGATAGCT
GGTTTTGGAACAATGTTATCAAGAGCTTAAAAAGAGGCAGAGTTTAAAATTGCTCCCTGC
CTATAAGTATTGCACTAGTTGGACACATATTTTATGACATTGCTTATTGCTTTTTTATAA
ATTTTGTACATAAGTTTCATGTCACCAAGCAATGAAAGTTTTCAAGAACTTAAAAAACGT
TAGCTGAACCATGTACTTTTTTTCGTGTAACGAAAAGTGTTATAATTGTATATATTTTTT
TAGATTTTCTTGCTATTGATTACTGTCAACACACCCAAATCGGTAGATAGTTCTGTAAAA
CAATTTATACTACCAGACTGTAACTTTAGAATATGGTGTAGAGAAGACCAATCTACCAAA
CCCCACATGTACACAAAGTAAAAATGTTTTGTTTATGTCATACAAACAGTTTGTTCAGGG
TAGCGATTTGTTCAGGAAGTCATACAAAAGGTTTTATTAGGATCAAACTCAATTACACTA
GTTAGATTTTTTTTTAGTTTTCTACTCTGTAATTGGTATTTTTACAAACACGGTGAAAAA
ATACCCTTTTATGGTCATTCGCAAATTACATTACAATATTGCTTATTTTTTACTTGTTGC
ATTAAATAATGTTGTGAACTGCCAACCATTGTAAAAAGTCTGAAC
| SUPERFAMILY |
DEATH-like_dom_sf (IPR011029) - T[118-227] 3.24E-17 |
| PANTHER |
Myelin_different_resp_MyD88 (IPR017281) - T[125-410] 1.7E-34 |
| SMART |
Death_domain (IPR000488) - T[130-221] 0.0026 |
| CDD |
MyD88_Death (IPR034249) - T[140-218] 2.31627E-23 |
| Pfam |
Death_domain (IPR000488) - T[142-218] 1.3E-9 |
| ProSiteProfiles |
Death_domain (IPR000488) - T[157-221] 10.61 |
| SUPERFAMILY |
Toll_tir_struct_dom_sf (IPR035897) - T[275-410] 1.2E-18 |
| ProSiteProfiles |
TIR_dom (IPR000157) - T[277-380] 15.324 |
| SMART |
TIR_dom (IPR000157) - T[278-412] 7.1E-4 |
| Gene3D |
Toll_tir_struct_dom_sf (IPR035897) - T[278-410] 9.3E-24 |
| Pfam |
TIR_dom (IPR000157) - T[288-382] 6.8E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MYD88_HUMAN | 28.72 % | 120 | 5.23E-31 |