Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Clone 'AHC0AAA68YF17' > 
  2. Clone 'citb035i23' > 
  3. Transcript 'KH2012:KH.C9.287.v1....' > 
  4. Clone 'ma200f13' > 
  5. Transcript 'Phmamm.CG.MTP2014.S7...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S71.g02510.03.t

Possible name(s)

MYD88; SIGIRR; TLR3

Gene model

Phmamm.CG.MTP2014.S71.g02510

Location

S71 [257,298 / 259,030]

Sequences

Amino acid sequence

Length: 374

>Phmamm.CG.MTP2014.S71.g02510.03.p
MAEEKKLQPEDLDEMASIQMQRKEMESFSSGYEKPPIDTPVECDSTNTDVAGQSSLGRRL
AGVQESGFDSGKSATSMPTLDASTHLHSPPPSYYNQPEGSWSSDQSTNLEKKDEVNLVAT
YGMGRPSDDYMSMPLKKLRYKTQAVLNECEVRQPNLTVGDLCKILQELGRLDVITDLQEC
FERDYKEPPLNSLVSARFDQSPAPSYRTVEPLQECAVSSTFYDHQQKTDIPPHLPEERYD
AFVLYNIADKDFILKEFLPKVEVDAQIKLFLPERDLTAGVQSYHAKLNTMIGRCSKLIII
LSNEFLTSPESQWALNMGVSLDPASRMQKIIPVIYKTITEPNILGGYNACDRTRVLEDSW
FWNNVIKSLKRGRV

Nucleotide sequence

Length: 1,125

>Phmamm.CG.MTP2014.S71.g02510.03.t
ATGGCTGAGGAAAAGAAGTTACAACCAGAAGACTTAGACGAAATGGCTTCTATTCAAATG
CAGCGCAAAGAAATGGAAAGCTTTTCATCTGGATATGAAAAGCCTCCCATCGATACCCCA
GTTGAATGTGACAGCACAAACACCGATGTGGCTGGTCAGTCATCATTAGGCAGACGACTA
GCTGGTGTACAAGAAAGTGGTTTTGACAGTGGGAAGTCCGCAACGTCAATGCCAACATTA
GATGCAAGCACACACCTTCACAGTCCCCCACCATCATACTACAACCAACCAGAGGGTTCA
TGGAGTTCTGACCAAAGCACCAACCTCGAAAAGAAAGATGAAGTAAACTTAGTTGCAACA
TATGGAATGGGAAGACCATCTGATGACTACATGAGTATGCCTTTAAAGAAGTTAAGATAC
AAGACACAAGCTGTGCTAAATGAATGTGAAGTCAGGCAGCCAAATTTAACTGTTGGAGAC
CTTTGTAAAATTTTGCAAGAACTTGGTCGCCTAGATGTTATAACCGACCTGCAGGAGTGT
TTTGAGCGGGATTACAAAGAGCCCCCTCTGAATTCACTGGTTAGTGCTCGTTTTGATCAG
TCACCAGCCCCTTCATACAGAACTGTGGAACCACTCCAGGAATGTGCTGTGTCAAGTACA
TTTTATGATCATCAACAGAAAACTGACATTCCACCACACTTACCAGAAGAAAGATATGAT
GCCTTCGTGTTATACAACATAGCTGATAAAGATTTTATTCTTAAGGAGTTTTTACCCAAA
GTTGAAGTAGATGCACAGATAAAGCTGTTTTTGCCTGAACGTGATCTTACAGCTGGAGTG
CAGTCTTATCATGCCAAACTTAACACAATGATTGGCAGGTGTTCCAAACTGATCATTATA
CTATCCAATGAATTTCTGACAAGTCCGGAAAGCCAATGGGCTTTAAATATGGGTGTAAGT
CTTGATCCAGCCTCTCGCATGCAAAAAATCATTCCAGTCATTTACAAAACCATAACAGAA
CCAAACATACTTGGAGGATACAATGCCTGTGACAGAACAAGAGTTTTGGAAGATAGCTGG
TTTTGGAACAATGTTATCAAGAGCTTAAAAAGAGGCAGAGTTTAA

InterProScan

PANTHER
Myelin_different_resp_MyD88 (IPR017281) - T[141-370] 5.1E-17
SUPERFAMILY
Toll_tir_struct_dom_sf (IPR035897) - T[235-370] 9.68E-19
ProSiteProfiles
TIR_dom (IPR000157) - T[237-340] 15.324
SMART
TIR_dom (IPR000157) - T[238-372] 7.1E-4
Gene3D
Toll_tir_struct_dom_sf (IPR035897) - T[238-370] 7.5E-24
Pfam
TIR_dom (IPR000157) - T[248-341] 6.3E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
MYD88_HUMAN 28.761 % 95.5 2.64E-22