- Transcript 'Phmamm.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S71.g02510.02.t
Possible name(s)
MYD88; SIGIRR; TLR3
Gene model
Location
S71 [257,281 / 259,554]
Amino acid sequence
Length: 416
>Phmamm.CG.MTP2014.S71.g02510.02.p
MAEEKKLQPEDLDEMASIQMQRKEMESFSSGYEKPPIDTPVECDSTNTDVAGQSSLGRRL
AGVQESGFDSGKSATSMPTLDASTHLHSPPPSYYNQPEGSWSSDQSTNLEKKDEVNLVAT
YGMGRPSDDYMSMPLKKLRYETRRQLGLHLDPDRPTVPNWKSVADYLGFSNLQIQNFEQD
RYKTQAVLNECEVRQPNLTVGDLCKILQELGRLDVITDLQECFERDYKEPPLNSLVSARF
DQSPAPSYRTVEPLQECAVSSTFYDHQQKTDIPPHLPEERYDAFVLYNIADKDFILKEFL
PKVEVDAQIKLFLPERDLTAGVQSYHAKLNTMIGRCSKLIIILSNEFLTSPESQWALNMG
VSLDPASRMQKIIPVIYKTITEPNILGGYNACDRTRVLEDSWFWNNVIKSLKRGRV
Nucleotide sequence
Length: 1,792
>Phmamm.CG.MTP2014.S71.g02510.02.t
GTAGCCAATGAAAAAGAATGGCTGAGGAAAAGAAGTTACAACCAGAAGACTTAGACGAAA
TGGCTTCTATTCAAATGCAGCGCAAAGAAATGGAAAGCTTTTCATCTGGATATGAAAAGC
CTCCCATCGATACCCCAGTTGAATGTGACAGCACAAACACCGATGTGGCTGGTCAGTCAT
CATTAGGCAGACGACTAGCTGGTGTACAAGAAAGTGGTTTTGACAGTGGGAAGTCCGCAA
CGTCAATGCCAACATTAGATGCAAGCACACACCTTCACAGTCCCCCACCATCATACTACA
ACCAACCAGAGGGTTCATGGAGTTCTGACCAAAGCACCAACCTCGAAAAGAAAGATGAAG
TAAACTTAGTTGCAACATATGGAATGGGAAGACCATCTGATGACTACATGAGTATGCCTT
TAAAGAAGTTAAGGTATGAAACACGGCGGCAGTTGGGTTTACATTTGGATCCAGACCGAC
CCACAGTTCCCAACTGGAAATCAGTGGCAGATTATTTAGGATTTAGCAATCTTCAGATTC
AAAATTTTGAACAAGACAGATACAAGACACAAGCTGTGCTAAATGAATGTGAAGTCAGGC
AGCCAAATTTAACTGTTGGAGACCTTTGTAAAATTTTGCAAGAACTTGGTCGCCTAGATG
TTATAACCGACCTGCAGGAGTGTTTTGAGCGGGATTACAAAGAGCCCCCTCTGAATTCAC
TGGTTAGTGCTCGTTTTGATCAGTCACCAGCCCCTTCATACAGAACTGTGGAACCACTCC
AGGAATGTGCTGTGTCAAGTACATTTTATGATCATCAACAGAAAACTGACATTCCACCAC
ACTTACCAGAAGAAAGATATGATGCCTTCGTGTTATACAACATAGCTGATAAAGATTTTA
TTCTTAAGGAGTTTTTACCCAAAGTTGAAGTAGATGCACAGATAAAGCTGTTTTTGCCTG
AACGTGATCTTACAGCTGGAGTGCAGTCTTATCATGCCAAACTTAACACAATGATTGGCA
GGTGTTCCAAACTGATCATTATACTATCCAATGAATTTCTGACAAGTCCGGAAAGCCAAT
GGGCTTTAAATATGGGTGTAAGTCTTGATCCAGCCTCTCGCATGCAAAAAATCATTCCAG
TCATTTACAAAACCATAACAGAACCAAACATACTTGGAGGATACAATGCCTGTGACAGAA
CAAGAGTTTTGGAAGATAGCTGGTTTTGGAACAATGTTATCAAGAGCTTAAAAAGAGGCA
GAGTTTAAAATTGCTCCCTGCCTATAAGTATTGCACTAGTTGGACACATATTTTATGACA
TTGCTTATTGCTTTTTTATAAATTTTGTACATAAGTTTCATGTCACCAAGCAATGAAAGT
TTTCAAGAACTTAAAAAACGTTAGCTGAACCATGTACTTTTTTTCGTGTAACGAAAAGTG
TTATAATTGTATATATTTTTTTAGATTTTCTTGCTATTGATTACTGTCAACACACCCAAA
TCGGTAGATAGTTCTGTAAAACAATTTATACTACCAGACTGTAACTTTAGAATATGGTGT
AGAGAAGACCAATCTACCAAACCCCACATGTACACAAAGTAAAAATGTTTTGTTTATGTC
ATACAAACAGTTTGTTCAGGGTAGCGATTTGTTCAGGAAGTCATACAAAAGGTTTTATTA
GGATCAAACTCAATTACACTAGTTAGATTTTTTTTTAGTTTTCTACTCTGTAATTGGTAT
TTTTACAAACACGGTGAAAAAATACCCTTTTATGGTCATTCGCAAATTACAT
| SUPERFAMILY |
DEATH-like_dom_sf (IPR011029) - T[120-229] 3.24E-17 |
| PANTHER |
Myelin_different_resp_MyD88 (IPR017281) - T[127-412] 1.7E-34 |
| SMART |
Death_domain (IPR000488) - T[132-223] 0.0026 |
| CDD |
MyD88_Death (IPR034249) - T[142-220] 2.28586E-23 |
| Pfam |
Death_domain (IPR000488) - T[144-220] 1.3E-9 |
| ProSiteProfiles |
Death_domain (IPR000488) - T[159-223] 10.61 |
| SUPERFAMILY |
Toll_tir_struct_dom_sf (IPR035897) - T[277-412] 1.22E-18 |
| ProSiteProfiles |
TIR_dom (IPR000157) - T[279-382] 15.324 |
| SMART |
TIR_dom (IPR000157) - T[280-414] 7.1E-4 |
| Gene3D |
Toll_tir_struct_dom_sf (IPR035897) - T[280-412] 9.4E-24 |
| Pfam |
TIR_dom (IPR000157) - T[290-384] 6.9E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MYD88_HUMAN | 28.72 % | 120 | 4.83E-31 |