- Transcript 'Phmamm.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S660.g11004.02.t
Possible name(s)
TGFBRAP1; VPS39
Gene model
Location
S660 [17,491 / 20,218]
Amino acid sequence
Length: 908
>Phmamm.CG.MTP2014.S660.g11004.02.p
MGLQVFDLQLLVGRENIMGDKPRICIESVETFGNNLYIGTNDCFIHHYLMHGDDAIEKIH
IFAERQNKKHLGMRKPVVQIKAALPLNQLLVNCDHTLLLLSMFDLSLQTAISGKIKNIQR
FCLNERPPRQNPFSVEICVSFQKKKSLQIFQIREDQVVPMHEVSFNESPRNMDIDDRNIC
ISTDTSYMMVNYETGSKQELFSFPSENGTFRLVTRVSASEFLVTAAESLAVFVSPDGTSN
RPPIQWSMGVFAAGVVQPFIVALDDEFITVHSMLDQQQKQSLPFQGGTCIQHCEGGSIIV
CTPKDVFILVQIPLQKQLNTLIANKEVDEALALVNASKRKLKRERYLNLLKRVQCMSGFV
QFQEFEFDEALQLFNEGVMDPREIVCLFPGLLPESSNFKRVVPPFHDIASIDQMCEGDSV
QILKCKEFTALYLELVCDELSALSGKGKNASKLVASMDDKEILVFTGEILYVTLIVFAQL
GQNVELQHFFTNKTLQASLLEAISSENCQMLIVKLKENGCHHVAALLQLKIGDLQNAMAT
WKAIEMGEVSDSTYPGLDFVADELADNCQNLETLWQNAEWILQINQAAGVRIFTNHEKLP
GIPAPHNHLESDDVVNFLNQFPSALMDYLNHLVIVKHSQKEKYHTHLVALYLELVLNQKS
AKSKDETGLMSARKKLQLILKQSDLYRIHIIMGKIQDAELYEEQVILHSKLGEHEKALEI
LVHKVRNSFAAKDYCIEQGKGDHQFLQQMFQSLLTVYLQDISATRGNTGSMAAVVHLLNG
HAEDFDPEKILHLLPSQWSVALLSNYLHNSLRLPLHGCRSKLVEHKLMKSQLLQMHKQRK
NLHSAPVVMREGRNCPVCSRVIIDGPFARYPNGVIVHTHCAKNKYICPVTGKVFKVLPKP
ETKLKDNL
Nucleotide sequence
Length: 2,727
>Phmamm.CG.MTP2014.S660.g11004.02.t
ATGGGTTTACAAGTCTTTGATCTCCAACTGCTTGTTGGAAGAGAGAATATTATGGGAGAC
AAACCAAGGATCTGCATTGAAAGTGTCGAAACATTTGGCAACAACTTGTACATTGGGACA
AATGACTGCTTCATTCATCACTACCTGATGCATGGAGATGATGCCATCGAAAAAATACAC
ATTTTTGCTGAAAGACAAAACAAGAAGCATCTTGGAATGAGAAAACCTGTGGTACAGATT
AAAGCTGCACTACCATTAAACCAATTGCTAGTAAATTGTGACCACACACTTCTCCTTTTA
AGCATGTTTGATCTCTCCCTTCAAACTGCAATTTCAGGAAAAATAAAAAACATCCAAAGG
TTTTGCTTAAATGAGAGACCGCCAAGACAAAACCCATTTTCTGTAGAAATCTGTGTCAGC
TTTCAAAAAAAGAAGTCCCTGCAAATATTTCAAATCCGTGAGGACCAAGTTGTGCCAATG
CATGAGGTGTCCTTTAATGAGAGCCCTCGTAATATGGACATTGATGATCGGAACATTTGC
ATTAGCACTGACACATCATACATGATGGTCAACTACGAAACTGGCTCAAAACAAGAGCTT
TTTTCCTTTCCTTCTGAAAATGGAACTTTCCGATTGGTTACTAGGGTTTCTGCTTCCGAG
TTTTTAGTCACAGCAGCTGAGTCATTAGCTGTGTTTGTATCCCCTGATGGAACTTCAAAC
AGGCCACCTATTCAATGGTCAATGGGGGTGTTTGCAGCAGGGGTGGTTCAGCCATTCATA
GTGGCTTTAGATGATGAGTTTATTACTGTGCACAGCATGTTGGACCAACAACAGAAGCAA
TCTCTTCCATTCCAGGGTGGAACATGTATTCAGCATTGTGAAGGAGGTTCCATTATTGTG
TGCACACCGAAAGATGTTTTTATACTGGTGCAAATTCCTTTGCAAAAACAGCTTAATACC
TTGATTGCTAACAAAGAGGTGGATGAAGCACTTGCATTGGTCAATGCCTCAAAGCGAAAA
CTAAAACGAGAAAGGTATCTTAATTTGCTAAAAAGGGTCCAATGCATGTCAGGTTTTGTG
CAGTTTCAAGAGTTTGAATTTGACGAAGCTCTGCAACTATTTAATGAAGGTGTCATGGAT
CCAAGGGAAATTGTCTGTTTGTTTCCTGGCCTTCTGCCGGAGAGTTCAAACTTCAAGAGA
GTTGTCCCCCCATTTCATGATATTGCCAGCATTGATCAAATGTGTGAAGGGGATTCTGTC
CAGATTCTAAAGTGCAAAGAGTTCACCGCCTTATATCTGGAACTGGTGTGTGATGAACTT
TCTGCTTTGAGTGGAAAAGGTAAAAATGCATCAAAACTAGTGGCATCAATGGATGATAAG
GAAATATTAGTTTTCACTGGTGAAATTTTGTATGTAACTTTAATAGTGTTTGCCCAGCTT
GGTCAAAATGTCGAATTACAACACTTCTTCACAAACAAAACATTGCAAGCCAGTTTGTTA
GAAGCCATTTCTAGTGAAAACTGTCAAATGTTGATTGTCAAACTAAAAGAAAATGGGTGT
CACCATGTTGCTGCATTGTTACAGCTTAAAATTGGCGACCTGCAAAATGCTATGGCTACT
TGGAAGGCAATAGAAATGGGTGAAGTATCTGATTCAACTTACCCTGGCCTAGACTTTGTA
GCGGATGAGTTAGCAGACAACTGCCAAAATTTGGAAACACTTTGGCAAAATGCTGAATGG
ATTCTCCAAATCAATCAAGCAGCTGGGGTCAGAATTTTTACCAATCATGAAAAACTGCCT
GGAATCCCTGCTCCCCATAATCATCTTGAATCAGACGATGTAGTTAATTTTCTGAATCAA
TTTCCAAGTGCCCTCATGGACTATTTAAACCATTTGGTAATAGTGAAACATTCTCAGAAA
GAGAAATATCACACTCATTTAGTGGCTCTGTACCTGGAGTTAGTTCTAAATCAGAAGTCA
GCTAAATCGAAGGATGAAACTGGATTAATGTCAGCCCGCAAAAAACTTCAGCTGATCTTA
AAGCAATCAGACCTGTATAGAATCCACATCATAATGGGCAAAATACAGGATGCTGAACTA
TATGAGGAACAAGTAATCTTACATAGCAAACTTGGAGAGCATGAAAAAGCTTTAGAAATA
TTGGTTCACAAAGTAAGAAATTCATTTGCTGCTAAAGACTACTGCATTGAACAAGGAAAA
GGCGACCACCAATTCCTGCAACAAATGTTTCAGTCATTACTTACAGTTTATTTACAAGAT
ATTTCAGCAACAAGGGGAAATACAGGGTCCATGGCTGCAGTTGTCCATTTGCTGAATGGG
CACGCTGAGGATTTTGACCCTGAAAAAATTCTGCACCTCTTGCCTTCACAATGGTCTGTT
GCCCTACTCTCAAATTATTTACACAACAGTCTGCGACTACCTTTGCATGGATGCAGAAGT
AAATTAGTGGAGCACAAATTGATGAAGTCCCAGCTTTTACAAATGCATAAGCAGCGAAAA
AACCTTCACTCTGCGCCAGTGGTGATGCGAGAAGGTAGAAACTGTCCAGTCTGTAGTCGT
GTAATAATTGATGGACCTTTTGCACGATATCCAAATGGTGTGATTGTCCACACTCACTGT
GCCAAAAATAAGTACATTTGTCCGGTCACTGGAAAGGTCTTTAAAGTTTTACCAAAACCT
GAGACCAAACTAAAGGACAATTTATGA
| PANTHER |
Vam6/VPS39/TRAP1 (IPR032914) - T[21-885] 4.1E-157 |
| ProSiteProfiles |
CNH_dom (IPR001180) - T[23-297] 19.94 |
| Pfam |
CNH_dom (IPR001180) - T[66-283] 1.7E-11 |
| ProSiteProfiles |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[599-762] 22.362 |
| Pfam |
VPS39/TGF_beta_rcpt-assoc_2 (IPR019453) - T[775-882] 8.1E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS39_HUMAN | 23.282 % | 157 | 2.08E-39 |
| TGFA1_HUMAN | 38.35 % | 590 | 0 |
