- Transcript 'Moocci.CG.ELv1_2.S59...' >
- Transcript 'Phmamm.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S649.g10911.02.t
Possible name(s)
PAX3; PAX6; PAX7
Gene model
Location
S649 [32,979 / 36,748]
Amino acid sequence
Length: 433
>Phmamm.CG.MTP2014.S649.g10911.02.p
METQEKRISNHIGPAVNYHPTTVALCFNGDTLPHKGHSGVNQLGGMFVNGRPLPDSIRQK
IVEFAHNGARPCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPQVVNKIA
MYKRECPSIFAWEIRDRLLNEAVCNAENIPSVSSINRVLRNLNGENGRVFSEGNSPNKNH
LPDDWSSSNWYDLNKQNHRHESSSEEVSVCNKDDQQMTKDTNARLQLKRKLQRNRTSFSQ
EQVEALEKEFERTHYPDVFARERLASKIDLPEARIQVWFSNRRAKWRREEKMRHQRGSNS
LNENLQQSNICISAHCSTFQHGAHHNNLTKSSEYKYGIPNTSLSNMYDDISSYPLPSAIS
TPNQPHSVSVSHCSPPAAVDDRTSLLSGSITAFQTVAHDPRNATHASLEQTIGHFQTPTI
PPEHFRYWTQSTQ
Nucleotide sequence
Length: 1,302
>Phmamm.CG.MTP2014.S649.g10911.02.t
ATGGAAACTCAAGAAAAACGTATTTCAAACCACATTGGACCTGCTGTTAACTATCATCCG
ACAACTGTTGCTCTTTGTTTTAATGGCGATACTTTACCCCATAAAGGGCATAGCGGAGTA
AACCAACTTGGTGGAATGTTTGTAAATGGACGCCCGTTACCTGACAGCATCCGCCAAAAA
ATTGTAGAATTCGCTCATAACGGAGCTCGACCTTGCGACATTTCAAGAATTCTTCAAGTT
TCCAACGGCTGCGTCAGCAAAATTTTGGCTAGATATTATGAAACTGGTACGATTCGACCA
AGAGCAATTGGTGGAAGCAAACCTCGTGTAGCAACACCGCAAGTGGTCAACAAAATTGCG
ATGTACAAACGGGAATGTCCAAGTATATTTGCTTGGGAAATAAGAGACAGATTGTTAAAC
GAGGCTGTATGTAATGCAGAAAATATACCAAGCGTTTCTTCGATCAACCGGGTACTGCGC
AATTTAAATGGCGAAAACGGTCGCGTGTTTTCGGAAGGAAATTCACCAAATAAAAACCAC
TTGCCAGATGATTGGTCAAGCTCAAACTGGTATGATTTAAACAAACAAAATCATCGACAT
GAAAGCTCCAGTGAAGAAGTTAGCGTATGCAATAAAGATGACCAGCAAATGACTAAGGAT
ACAAATGCAAGGTTGCAACTAAAGCGAAAGTTGCAACGGAATCGAACTTCTTTTTCGCAA
GAACAAGTTGAGGCTTTGGAAAAAGAATTTGAAAGAACCCATTATCCCGACGTTTTTGCC
AGAGAACGACTTGCCTCCAAAATTGATTTACCTGAAGCGAGGATACAGGTTTGGTTTTCG
AATCGTCGAGCAAAATGGAGACGGGAAGAAAAAATGCGGCATCAGCGCGGAAGCAACAGT
TTAAACGAAAATCTGCAGCAGTCAAACATTTGCATTTCAGCGCATTGCTCCACTTTTCAA
CATGGGGCTCACCATAATAATTTGACAAAATCCAGCGAGTATAAGTATGGGATACCAAAT
ACAAGTTTAAGTAACATGTACGATGACATATCATCATATCCACTACCGTCCGCTATTTCC
ACTCCAAACCAACCACACTCAGTATCTGTGTCGCATTGTTCTCCACCTGCTGCAGTTGAT
GACAGAACCAGTTTATTAAGTGGATCAATCACAGCATTCCAAACAGTTGCTCACGATCCC
CGCAACGCAACTCATGCTTCGTTGGAGCAGACCATAGGGCATTTCCAAACACCGACAATT
CCCCCCGAACATTTTCGTTACTGGACACAAAGCACCCAGTGA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[30-104] 1.2E-40 - T[105-167] 5.9E-32 |
| Pfam |
Paired_dom (IPR001523) - T[36-160] 1.6E-69 |
| CDD |
Paired_dom (IPR001523) - T[36-162] 2.02776E-80 |
| SMART |
Paired_dom (IPR001523) - T[36-160] 1.0E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[36-162] 62.319 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[38-161] 6.27E-37 - T[228-293] 5.99E-23 |
| PRINTS |
Paired_dom (IPR001523) - T[40-55] 1.9E-41 - T[58-76] 1.9E-41 - T[78-95] 1.9E-41 - T[96-113] 1.9E-41 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[70-86] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[229-289] 20.115 |
| SMART |
Homeobox_dom (IPR001356) - T[231-293] 1.2E-25 |
| CDD |
Homeobox_dom (IPR001356) - T[233-290] 7.80489E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[233-288] 8.3E-22 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[264-287] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX7_HUMAN | 51.301 % | 254 | 2.14E-79 |
| PAX3_HUMAN | 51.685 % | 265 | 5.27E-84 |
| PAX6_HUMAN | 60 % | 384 | 4.39E-131 |