- Clone 'cilv022h19' >
- Transcript 'KH2012:KH.C5.608.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S649.g10911.01.t
Possible name(s)
PAX3; PAX6; PAX7
Gene model
Location
S649 [32,974 / 36,772]
Amino acid sequence
Length: 472
>Phmamm.CG.MTP2014.S649.g10911.01.p
HGSRNNFDMETQEKRISNHIGPAVNYHPTTVALCFNGDTLPHKGHSGVNQLGGMFVNGRP
LPDSIRQKIVEFAHNGARPCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVAT
PQVVNKIAMYKRECPSIFAWEIRDRLLNEAVCNAENIPSVSSINRVLRNLNGENGRVFSE
GNSPNKNHLPDDWSSSNWYDLNKQNHRHESSSEEVSVCNKDDQQMTKDTNARLQLKRKLQ
RNRTSFSQEQVEALEKEFERTHYPDVFARERLASKIDLPEARIQVWFSNRRAKWRREEKM
RHQRGSNSLNENLQQSNICISAHCSTFQHGAHHNNSQILPYGAVPIAESYNDITNCSIPT
AQWPQNLTKSSEYKYGIPNTSLSNMYDDISSYPLPSAISTPNQPHSVSVSHCSPPAAVDD
RTSLLSGSITAFQTVAHDPRNATHASLEQTIGHFQTPTIPPEHFRYWTQSTQ
Nucleotide sequence
Length: 1,424
>Phmamm.CG.MTP2014.S649.g10911.01.t
CACGGTTCTCGTAATAATTTTGACATGGAAACTCAAGAAAAACGTATTTCAAACCACATT
GGACCTGCTGTTAACTATCATCCGACAACTGTTGCTCTTTGTTTTAATGGCGATACTTTA
CCCCATAAAGGGCATAGCGGAGTAAACCAACTTGGTGGAATGTTTGTAAATGGACGCCCG
TTACCTGACAGCATCCGCCAAAAAATTGTAGAATTCGCTCATAACGGAGCTCGACCTTGC
GACATTTCAAGAATTCTTCAAGTTTCCAACGGCTGCGTCAGCAAAATTTTGGCTAGATAT
TATGAAACTGGTACGATTCGACCAAGAGCAATTGGTGGAAGCAAACCTCGTGTAGCAACA
CCGCAAGTGGTCAACAAAATTGCGATGTACAAACGGGAATGTCCAAGTATATTTGCTTGG
GAAATAAGAGACAGATTGTTAAACGAGGCTGTATGTAATGCAGAAAATATACCAAGCGTT
TCTTCGATCAACCGGGTACTGCGCAATTTAAATGGCGAAAACGGTCGCGTGTTTTCGGAA
GGAAATTCACCAAATAAAAACCACTTGCCAGATGATTGGTCAAGCTCAAACTGGTATGAT
TTAAACAAACAAAATCATCGACATGAAAGCTCCAGTGAAGAAGTTAGCGTATGCAATAAA
GATGACCAGCAAATGACTAAGGATACAAATGCAAGGTTGCAACTAAAGCGAAAGTTGCAA
CGGAATCGAACTTCTTTTTCGCAAGAACAAGTTGAGGCTTTGGAAAAAGAATTTGAAAGA
ACCCATTATCCCGACGTTTTTGCCAGAGAACGACTTGCCTCCAAAATTGATTTACCTGAA
GCGAGGATACAGGTTTGGTTTTCGAATCGTCGAGCAAAATGGAGACGGGAAGAAAAAATG
CGGCATCAGCGCGGAAGCAACAGTTTAAACGAAAATCTGCAGCAGTCAAACATTTGCATT
TCAGCGCATTGCTCCACTTTTCAACATGGGGCTCACCATAATAATTCACAAATACTGCCA
TATGGTGCGGTCCCAATCGCTGAAAGTTACAATGATATTACCAACTGCTCCATACCAACA
GCTCAATGGCCTCAAAATTTGACAAAATCCAGCGAGTATAAGTATGGGATACCAAATACA
AGTTTAAGTAACATGTACGATGACATATCATCATATCCACTACCGTCCGCTATTTCCACT
CCAAACCAACCACACTCAGTATCTGTGTCGCATTGTTCTCCACCTGCTGCAGTTGATGAC
AGAACCAGTTTATTAAGTGGATCAATCACAGCATTCCAAACAGTTGCTCACGATCCCCGC
AACGCAACTCATGCTTCGTTGGAGCAGACCATAGGGCATTTCCAAACACCGACAATTCCC
CCCGAACATTTTCGTTACTGGACACAAAGCACCCAGTGAACAGA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[38-112] 1.4E-40 - T[113-175] 6.7E-32 |
| CDD |
Paired_dom (IPR001523) - T[44-170] 6.55518E-80 |
| SMART |
Paired_dom (IPR001523) - T[44-168] 1.0E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[44-170] 62.319 |
| Pfam |
Paired_dom (IPR001523) - T[44-168] 1.9E-69 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[46-169] 7.47E-37 - T[236-301] 6.42E-23 |
| PRINTS |
Paired_dom (IPR001523) - T[48-63] 2.5E-41 - T[66-84] 2.5E-41 - T[86-103] 2.5E-41 - T[104-121] 2.5E-41 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[78-94] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[237-297] 20.115 |
| SMART |
Homeobox_dom (IPR001356) - T[239-301] 1.2E-25 |
| Pfam |
Homeobox_dom (IPR001356) - T[241-296] 9.3E-22 |
| CDD |
Homeobox_dom (IPR001356) - T[241-298] 5.25004E-23 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[272-295] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX7_HUMAN | 51.301 % | 254 | 3.71E-79 |
| PAX3_HUMAN | 51.685 % | 265 | 1.45E-83 |
| PAX6_HUMAN | 69.091 % | 379 | 9.41E-129 |