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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.L41.79.v1....'
  2. Transcript 'Harore.CG.MTP2014.S1...'
  3. Transcript 'Cisavi.CG.ENS81.R7.2...'
  4. Transcript 'KH2012:KH.C1.1100.v1...'
  5. Transcript 'Phmamm.CG.MTP2014.S6...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S627.g10707.01.t

Possible name(s)

TRIM2; TRIM3; TRIM71

Location

S627 [34,200 / 35,868]

Sequences

Amino acid sequence

Length: 272

>Phmamm.CG.MTP2014.S627.g10707.01.p
MWKVSRQIGKPGSDVGEFDYARGLRVSRDTGNVIIADVNNKRVQIFDGNEKYLYHWSVEV
KGMKLCPLDVHRMTSDLVIGAIEGQAVIWSCPDVTDYSGVETRILKTFGNEYFVFPRSVV
SNERKQLFVSDVGKHVVVSHDWEGNVIRSIGGLGSGDSQFNWPYYMCQDDKGRLVVSDSH
NRCVKLFDRDLKFISSFGHGYFACACGVALEDGGNFVVGDYDKQSILRFSADGKFMEYLD
QDMELPCSSVATGNNNEILAACQDGVKVYYRS

Nucleotide sequence

Length: 819

>Phmamm.CG.MTP2014.S627.g10707.01.t
ATGTGGAAAGTTTCCCGCCAAATCGGAAAACCCGGCAGTGACGTGGGAGAGTTTGATTAC
GCAAGAGGACTGAGAGTATCACGTGACACAGGTAACGTCATCATTGCTGACGTCAACAAT
AAACGCGTCCAGATTTTTGATGGAAATGAAAAATATTTGTATCATTGGTCGGTTGAGGTG
AAAGGGATGAAACTTTGTCCACTAGATGTCCACAGGATGACCTCTGACCTCGTAATAGGG
GCGATTGAAGGTCAAGCGGTTATTTGGAGTTGTCCTGACGTCACAGATTACAGCGGAGTC
GAGACGCGGATTCTTAAGACTTTCGGGAACGAATATTTCGTTTTTCCTCGGAGTGTTGTA
TCCAATGAGCGCAAGCAACTATTCGTCAGTGACGTCGGAAAACACGTGGTTGTGTCACAT
GACTGGGAAGGAAACGTCATCAGATCGATCGGAGGTCTCGGTAGCGGGGACAGTCAGTTT
AATTGGCCTTACTACATGTGCCAGGATGACAAGGGTCGGTTGGTTGTGTCTGATTCCCAC
AACAGATGCGTGAAGTTGTTTGACCGGGATCTCAAGTTCATCTCATCGTTCGGGCATGGC
TACTTTGCATGTGCCTGTGGAGTTGCATTAGAAGACGGAGGGAACTTCGTGGTTGGAGAT
TATGACAAGCAATCCATTCTGAGATTTTCAGCAGACGGGAAATTCATGGAATATCTCGAC
CAAGACATGGAACTTCCCTGTTCGTCGGTTGCTACGGGCAACAACAACGAAATACTCGCG
GCTTGTCAGGACGGCGTTAAAGTTTACTACAGATCTTAA

InterProScan

Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[2-272] 4.6E-44
ProSiteProfiles
NHL_repeat_subgr (IPR013017) - T[5-49] 11.904 - T[104-138] 4.153 - T[147-190] 11.801 - T[191-232] 8.059
Pfam
NHL_repeat (IPR001258) - T[18-46] 2.0E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRIM2_HUMAN 27.273 % 88.2 1.05E-19
TRIM3_HUMAN 24.4 % 91.3 9.41E-21