- Transcript 'Phmamm.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S617.g10607.01.t
Possible name(s)
TRAF4; TRAF5; TRAF6
Gene model
Location
S617 [66,024 / 77,338]
Amino acid sequence
Length: 381
>Phmamm.CG.MTP2014.S617.g10607.01.p
VLTNELNGFDDNTTVGYDYEFIPTLDNKYMCPICLLALRDPVQTGCGHRFCHLCILRCIK
KKARCPIDQMILSPKQLFQDRSAHREVLDLKVRCTNDNCDVVSELRNIEQHIEACPFRKV
SCKHGCGELLLVEDCDRHESDLCPMRPIMCSICQQEFPFNAQNEHEEDCKQHQPVECQYC
HHQIKRYRLNQHVSGECPQAPIRCVFDKVGCHLELSRHGIQKHMEGATQIHLQYLLSTVS
ALQKHNDALQKSLQEAKDKIKQIDDNNMNLSPAAMLRTSMAGLDLDDQDELSSVNIYDAD
LTNETPSASGTEENGEYDEIAMIKAYNKHMEENEIPIPITSSSASSGSSPVVATQNGGTG
GECTTSTTFQVLQKKHTDHDQ
Nucleotide sequence
Length: 1,145
>Phmamm.CG.MTP2014.S617.g10607.01.t
GTCCTAACCAATGAACTAAATGGATTTGATGATAACACAACAGTGGGTTATGATTATGAG
TTTATTCCAACACTTGACAACAAGTACATGTGTCCAATATGCTTGCTTGCTTTGAGAGAT
CCTGTTCAAACTGGTTGTGGTCATCGCTTTTGTCATCTCTGTATTTTGCGATGCATAAAA
AAAAAAGCCCGCTGCCCGATAGATCAGATGATCTTATCTCCAAAGCAGTTATTTCAAGAT
CGTTCAGCCCACCGAGAAGTCCTTGATTTAAAAGTCAGGTGTACAAACGACAACTGTGAT
GTTGTGTCAGAGCTGAGGAATATAGAGCAACACATAGAGGCATGTCCATTTCGGAAGGTT
TCCTGCAAACACGGATGTGGTGAACTGTTGTTAGTAGAAGATTGTGATCGTCACGAATCA
GATCTTTGTCCAATGCGCCCAATCATGTGCTCTATTTGTCAACAAGAATTTCCCTTTAAT
GCTCAAAATGAGCATGAAGAAGATTGTAAGCAACATCAGCCAGTGGAATGCCAATACTGT
CATCATCAAATTAAGCGCTATCGACTAAATCAGCATGTAAGTGGTGAGTGTCCTCAAGCT
CCAATTCGCTGTGTTTTTGACAAAGTTGGTTGCCATTTGGAGTTGTCCCGGCACGGCATT
CAAAAGCACATGGAAGGTGCAACACAAATTCATCTTCAATATCTCCTCAGCACAGTAAGT
GCATTGCAAAAACACAACGATGCTCTACAGAAAAGCTTGCAAGAAGCCAAGGACAAAATT
AAGCAGATCGATGACAACAACATGAATCTTTCCCCAGCTGCTATGTTACGGACATCCATG
GCAGGCCTGGATTTGGACGACCAGGATGAACTGAGCAGTGTAAACATTTACGATGCTGAC
CTTACTAATGAAACACCTAGTGCTTCAGGAACAGAGGAAAATGGGGAATACGACGAAATT
GCGATGATCAAGGCTTACAACAAGCACATGGAGGAAAATGAGATCCCCATCCCCATCACT
TCTTCATCCGCCTCATCAGGATCTTCTCCCGTAGTAGCGACACAGAATGGAGGGACGGGA
GGGGAGTGCACAACCTCCACCACATTTCAGGTCCTCCAGAAAAAGCACACCGACCATGAC
CAAAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[12-123] 7.9E-28 - T[124-172] 6.1E-5 - T[173-232] 2.6E-5 |
| SMART |
Znf_RING (IPR001841) - T[31-68] 3.5E-6 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[31-69] 11.339 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[46-55] . |
| SUPERFAMILY |
TRAF-like (IPR008974) - T[90-155] 7.85E-6 - T[175-233] 3.53E-6 |
| ProSiteProfiles |
Znf_TRAF (IPR001293) - T[138-221] 11.043 |
| Pfam |
Znf_TRAF (IPR001293) - T[165-223] 4.1E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRAF4_HUMAN | 31.455 % | 105 | 4.24E-25 |
| TRAF5_HUMAN | 32.937 % | 129 | 3.4E-33 |
| TRAF6_HUMAN | 32.362 % | 166 | 8.74E-47 |