- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S600.g10450.03.t
Possible name(s)
RREB1; ZKSCAN8; ZNF641
Gene model
Location
S600 [57,147 / 72,801]
Amino acid sequence
Length: 1,287
>Phmamm.CG.MTP2014.S600.g10450.03.p
MSRRKQSAPCKVGGNSPSSYSHTENDENISSLSFTCSPLDDEEDSKSSSPKSLIQNERVP
IGLKAYSISSTNSSLCSSGTASSQEEPIQKPPPGDVKTLCLSNYSKSSDESEPKNKRFSA
RIRAKVISKAQTPGLENEAKSSSITLLNQSNSGLHRRNLLDKGRKLSCEEELTCPICFKT
FMSRYGLLTHTEIHGTPELKCLICNLGFSRRSAFVAHQVHYHGEEKYTDDSSLFQVQNGK
QRSVGSVPTGFSDLAFIDFTCKKFPAIAENLCVQQKHQLTEKDRRHFFMCKKCDVLFPTL
FVLKFHLKHSHSTPNGNLSLPKLTISGKTYILNSERISFGVSIDTTSASTNPSSFLNGLM
SRNFMQALQLKSVTESKDVSCANRPCAYGVDDPSIRTSPLVAYLGVPQWLRNNNTQTNWC
ANESEASIRPPLKMKLLRCKSVPGIDEPTISSAESYSVNNKDLANRTKTNDGCACMICGE
QFATSGAVDAHRAGTTCGIGVRTSSNGRKLFWCRLCDYASFEKSTILRFRCRMCRAMFSS
RSNGARHVMDKHGVFSRKGANEMISCVFSAAEYHQGNEPRPLTSTSNTGTRTQKVEDFAS
SRKTFLGNIRTAFIAPKTAPKRRAVIQSDPRPVKVPRLIPLQQIQAYRDTAQKLHDHFRD
NYSDILETMGISDYRKDTKDIRKMSSTLVSLLASTSSLLIDNAIRKSSSPASSSKSSVLN
VSKNVETSFVTDEAVTDSNAFMETNESVEHHWKNDDVSDKDSAYHDLVQMYADGKWESLV
ASAEDEEKNLLPEQTNLRLSQQNEGFEELSQPHEDVHEKESSSDLTSIKKLVDFVHQPGP
ILINGYNNTKVSSGNDGKTSKNEARGKYRMVAIKPKNTETIQINSGLAWKFVPYPPEMRD
EKGRYMKVSEQTKKTTIPTRSISSYLNDSTRPTMVSMSGSSNSKVTTGFEERKSRFLGNR
LQYRSRKCPKCSKTFPWASSLRRHIMTHTGLKPYMCARCSMRFTTRSNLLRHAYRRHNVS
RDADERHRVLIALTPRQQQEYAVTEAEQTLANPEQELNEDEEPNTPAEEVPEEVLDNDVA
DDDDTKNSSSQHESQVKKEADTTNKSLLVKIDKQAPTPATILPSTPVIPPDVSSTSKDED
EDLKKLSSPVSKPSNSAFKCTICSVGFTKRNNAARHVQQQHHISRHRSNFAQLIERLNNS
PENSQDEAPQESPVVKKRQEKSSTDVKPNSEQLSKAMKMHTSPPLWRSQRVAAKRKLGQS
TEQAVESTPTPPKTRDHDHQRSKVPLL
Nucleotide sequence
Length: 3,864
>Phmamm.CG.MTP2014.S600.g10450.03.t
ATGTCTCGGCGCAAACAATCCGCCCCATGCAAAGTTGGAGGCAATTCACCATCAAGTTAC
AGCCACACTGAAAATGATGAGAATATTTCCAGTTTATCTTTTACTTGTTCACCATTGGAT
GATGAAGAAGATTCAAAGTCATCTTCCCCAAAATCATTGATACAAAATGAAAGGGTGCCA
ATTGGGTTGAAAGCATATAGCATCTCAAGTACCAACTCCAGCTTATGTTCCAGTGGAACT
GCATCATCACAAGAGGAACCCATTCAAAAGCCGCCACCAGGGGATGTTAAAACTCTATGC
TTGTCAAACTACAGCAAATCCTCTGATGAATCTGAACCAAAAAACAAAAGATTTTCAGCT
CGCATTCGTGCCAAAGTGATATCAAAAGCACAGACTCCAGGTTTGGAAAATGAGGCAAAA
TCTTCATCTATAACTCTTTTGAATCAAAGTAACTCTGGGTTACATAGAAGAAATTTGCTT
GACAAGGGCAGAAAATTGTCTTGTGAAGAGGAGTTGACATGTCCAATATGTTTCAAAACA
TTTATGTCAAGATATGGACTGCTAACTCACACTGAAATCCATGGGACTCCTGAACTCAAA
TGCCTCATTTGCAACTTAGGATTTAGTAGAAGATCTGCTTTTGTTGCTCATCAAGTACAC
TACCATGGTGAAGAAAAGTATACAGATGATTCCAGTTTATTTCAGGTTCAAAACGGCAAA
CAAAGAAGTGTGGGAAGTGTACCAACTGGTTTCAGTGACTTGGCATTTATTGATTTTACA
TGCAAAAAGTTTCCAGCAATAGCAGAGAACTTGTGTGTTCAACAAAAACATCAACTCACA
GAAAAGGACCGAAGACATTTTTTTATGTGCAAAAAATGTGATGTTCTCTTTCCCACCTTG
TTTGTGTTAAAGTTTCATTTGAAGCACAGTCACTCAACACCGAATGGAAATTTATCTCTT
CCAAAACTCACTATATCTGGAAAGACATACATTCTTAACAGTGAAAGGATTAGTTTTGGT
GTAAGCATTGACACCACAAGTGCTTCTACCAACCCTTCAAGTTTCCTAAATGGTTTGATG
TCTCGCAATTTTATGCAAGCCTTGCAACTTAAGAGTGTGACAGAAAGTAAAGATGTTTCA
TGTGCAAACAGGCCCTGTGCTTATGGTGTTGATGACCCATCCATTCGTACCTCCCCACTG
GTGGCCTACCTCGGTGTACCTCAATGGCTACGCAACAATAACACTCAAACTAACTGGTGT
GCAAATGAATCAGAGGCAAGCATTAGACCACCACTAAAAATGAAACTTTTACGTTGCAAA
TCTGTGCCAGGCATTGATGAACCAACTATTTCATCTGCAGAAAGCTACTCTGTAAACAAC
AAAGATCTTGCAAATAGAACAAAAACAAATGATGGTTGTGCATGTATGATATGTGGAGAG
CAGTTTGCAACTAGTGGTGCAGTTGATGCTCACCGAGCTGGAACAACATGTGGAATTGGG
GTCCGCACATCTTCAAATGGAAGAAAACTGTTCTGGTGTCGTTTGTGTGACTACGCATCA
TTTGAAAAAAGTACCATCTTAAGGTTCCGCTGTCGGATGTGCAGAGCAATGTTTAGTTCA
CGAAGTAATGGTGCTCGGCATGTTATGGATAAGCATGGCGTGTTCAGCAGAAAAGGAGCA
AACGAAATGATCTCTTGTGTGTTTTCCGCCGCCGAATACCATCAGGGGAACGAACCACGA
CCGTTAACTTCAACCTCGAATACTGGAACTCGGACTCAAAAAGTCGAAGATTTTGCTTCT
TCAAGAAAGACATTTTTGGGGAATATTAGGACGGCGTTTATAGCACCGAAAACAGCACCA
AAGAGACGAGCTGTTATTCAATCAGACCCTCGTCCTGTCAAAGTTCCTCGTCTTATTCCA
CTGCAACAAATCCAAGCTTATAGAGACACTGCTCAAAAGTTGCACGATCACTTCCGGGAT
AATTATTCAGATATTTTGGAGACGATGGGAATCTCGGATTACAGAAAAGATACGAAAGAC
ATTCGTAAAATGTCATCGACACTTGTGAGTCTGCTGGCATCAACTAGTTCTCTGCTTATT
GACAACGCAATCCGAAAATCATCATCGCCTGCAAGTAGCAGTAAAAGCTCTGTATTGAAC
GTGTCAAAAAATGTTGAAACATCGTTCGTAACCGACGAAGCAGTGACGGATTCTAATGCT
TTCATGGAAACGAATGAGAGCGTTGAACATCATTGGAAAAACGACGATGTCAGCGACAAA
GATTCCGCATATCATGACCTCGTGCAGATGTACGCAGACGGAAAATGGGAAAGTCTTGTT
GCCTCGGCAGAAGACGAAGAAAAAAACCTACTACCGGAACAAACGAACTTGCGTTTATCT
CAACAAAACGAAGGATTCGAGGAGCTCAGTCAGCCACACGAAGATGTTCATGAAAAGGAG
TCCTCTTCCGATTTGACAAGCATAAAAAAATTGGTGGACTTTGTTCATCAACCAGGACCT
ATTCTTATAAATGGTTACAACAACACCAAGGTTTCAAGTGGAAATGATGGCAAAACATCA
AAAAATGAAGCAAGAGGAAAATATAGGATGGTCGCCATAAAACCAAAGAACACTGAGACG
ATCCAGATTAACTCGGGTTTAGCTTGGAAGTTTGTTCCATATCCTCCTGAGATGCGCGAC
GAGAAAGGAAGGTATATGAAAGTTTCGGAACAGACAAAGAAAACGACAATCCCCACCCGT
TCCATCTCGTCATACCTCAATGATTCCACGCGTCCAACGATGGTGTCTATGTCTGGGTCC
TCTAATTCAAAAGTAACTACAGGTTTTGAAGAAAGAAAAAGCCGCTTTCTGGGAAATCGC
TTACAGTACCGCAGCAGAAAGTGTCCAAAGTGCAGTAAAACATTTCCTTGGGCTTCTTCT
TTAAGAAGACACATAATGACACACACAGGATTAAAGCCATACATGTGTGCTCGCTGCTCC
ATGAGATTCACGACTCGATCCAACTTGTTGCGTCACGCCTACCGACGTCATAACGTTTCA
CGAGATGCGGATGAGCGACACCGAGTGTTGATAGCTCTTACACCACGACAACAGCAGGAG
TATGCGGTGACTGAAGCTGAACAAACTCTTGCAAATCCTGAACAAGAATTGAACGAAGAT
GAGGAACCGAATACGCCTGCGGAAGAAGTTCCGGAGGAAGTTCTGGACAATGACGTTGCT
GACGACGACGACACGAAAAACTCGAGTTCACAACACGAATCACAGGTGAAGAAAGAAGCG
GATACTACAAACAAGTCGTTGTTGGTGAAGATTGATAAACAAGCACCGACACCAGCCACT
ATTCTCCCATCCACCCCTGTTATTCCACCTGATGTAAGCTCAACGTCGAAAGATGAAGAT
GAAGACCTGAAAAAATTAAGTAGTCCTGTGTCCAAACCTTCTAACTCGGCTTTTAAATGC
ACCATCTGCTCTGTGGGTTTCACGAAGCGGAACAATGCGGCTCGTCACGTTCAACAGCAA
CATCACATATCGCGTCATCGCTCCAACTTCGCGCAACTTATTGAGCGACTGAATAATTCA
CCCGAAAACTCCCAGGACGAAGCACCTCAAGAATCACCGGTTGTCAAAAAACGACAAGAA
AAATCGAGTACTGACGTCAAACCGAACTCAGAACAATTGTCAAAGGCGATGAAAATGCAT
ACTTCCCCGCCTCTTTGGAGAAGCCAAAGAGTTGCTGCAAAACGGAAGTTGGGTCAATCT
ACTGAACAAGCTGTAGAATCGACACCTACACCGCCCAAAACCAGAGACCATGATCACCAA
CGATCAAAGGTACCTTTGTTATAA
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[172-194] 8.912 - T[199-227] 9.473 - T[966-993] 13.9 - T[994-1022] 10.845 - T[1158-1186] 9.224 |
| SMART |
Znf_C2H2_type (IPR013087) - T[172-194] 0.05 - T[199-222] 0.42 - T[288-311] 0.93 - T[473-493] 210.0 - T[529-552] 1.7 - T[966-988] 4.6E-4 - T[994-1017] 0.053 - T[1158-1181] 0.1 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[173-219] 8.07E-6 - T[966-1013] 1.11E-13 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[174-194] . - T[201-222] . - T[290-311] . - T[531-552] . - T[968-988] . - T[996-1017] . - T[1160-1182] . |
| Pfam |
Znf_C2H2_type (IPR013087) - T[967-988] 0.0019 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RREB1_HUMAN | 33.974 % | 98.2 | 1.76E-20 |