- Transcript 'Phmamm.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S597.g10419.03.t
Possible name(s)
NKX2-1; NKX2-2; NKX2-6
Gene model
Location
S597 [19,871 / 25,467]
Amino acid sequence
Length: 518
>Phmamm.CG.MTP2014.S597.g10419.03.p
MSLSPKQTTTTPFSVTDILSPLDEPYGQHGPATVDDGGNLQTRREIHDSYSSASMDPGHS
AVASSGLHVPSLGSSLSTGSTSPPMSSLYRQPMSMGTPPHHGVHHHQQIPAASVPYQSMP
TAAAVAAGMNSGYNLHPMAPAPQATFHTMPGSGSSGYCNGTVADLPSYNNVQATGWYGAP
ANPDPRFGTVSMSRYLNPSAGMGMNTYGGVNMMSGTGMDGMHKSLLPASQRRKRRVLFSQ
AQVFELERRFKQQKYLSAPEREHLAQMIHLTPTQVKIWFQNHRYKNKRSLKDKQAQVDSV
TVVTQQQQGSQNSNSQNHHSEINHQQQQQQAMASGNHTPQQTYSPATVAGSGNTGQVQVV
TSMVDNADGSHHMVHGMVQQNQQNGDHSPSRRAVMSDVSVGSDRGVEESPNMHLALTPVA
QSNLPEPGMPNGNEVGMGQFATTVKIEEVNVVGSEASVPHSHYLSSTNNSQHQDLMNVNV
TTLNTVDAYQQAQHHGHHHLAIGNTMLNDSSLLYGVYR
Nucleotide sequence
Length: 1,557
>Phmamm.CG.MTP2014.S597.g10419.03.t
ATGTCCTTGAGTCCCAAACAAACGACAACGACGCCATTTTCAGTAACGGATATCCTCAGC
CCGCTCGACGAACCTTACGGCCAGCACGGTCCCGCGACGGTAGACGACGGCGGCAACCTG
CAAACGCGACGAGAAATTCACGACTCGTACAGCAGTGCGTCTATGGATCCAGGACATTCG
GCAGTAGCATCCAGTGGCTTGCACGTACCGAGCCTTGGCAGTTCTCTGAGCACCGGATCA
ACCTCGCCTCCCATGTCGTCGCTTTACCGACAGCCGATGTCTATGGGCACGCCGCCGCAC
CACGGGGTGCACCATCATCAGCAAATTCCGGCGGCGAGCGTACCTTATCAGAGTATGCCA
ACCGCGGCGGCTGTTGCTGCTGGCATGAATTCCGGCTACAACCTCCACCCAATGGCACCT
GCTCCTCAGGCGACTTTTCACACGATGCCGGGATCAGGATCGTCAGGGTACTGCAACGGA
ACTGTAGCCGACCTTCCGTCATATAACAATGTTCAGGCAACAGGATGGTACGGCGCACCG
GCAAACCCAGATCCCCGATTCGGCACAGTGTCAATGTCGCGGTATCTCAATCCATCGGCC
GGAATGGGAATGAACACTTACGGTGGGGTGAATATGATGTCGGGCACGGGTATGGACGGA
ATGCATAAGTCACTTTTACCGGCTTCGCAAAGGCGAAAGAGAAGGGTTTTGTTTTCCCAA
GCTCAGGTGTTTGAGTTGGAACGACGCTTCAAACAGCAGAAGTACTTGTCAGCACCCGAG
CGTGAGCACCTGGCGCAAATGATACATCTGACTCCGACCCAAGTGAAGATTTGGTTCCAA
AACCATCGATACAAAAACAAGCGATCACTGAAGGACAAACAAGCCCAGGTGGATTCAGTC
ACGGTCGTCACACAACAGCAACAAGGTTCTCAGAATTCTAATAGTCAGAATCACCACAGC
GAAATCAACCACCAGCAACAACAGCAGCAGGCCATGGCAAGCGGAAACCACACACCCCAA
CAAACATATTCACCCGCTACAGTCGCTGGATCCGGGAACACCGGTCAAGTTCAAGTAGTC
ACGTCTATGGTGGACAACGCGGATGGTTCGCATCATATGGTCCACGGCATGGTGCAGCAA
AATCAGCAGAACGGAGACCACTCACCAAGTAGGCGAGCCGTGATGTCGGACGTGTCGGTA
GGAAGCGACCGTGGCGTCGAAGAGTCGCCCAATATGCACTTGGCCCTTACCCCTGTCGCC
CAATCGAACCTTCCAGAACCTGGGATGCCAAACGGGAACGAAGTTGGTATGGGCCAGTTT
GCGACTACAGTGAAGATTGAAGAGGTGAACGTGGTGGGCAGTGAGGCGTCAGTGCCTCAT
AGCCACTACCTGAGCAGCACCAACAACAGCCAACATCAGGACCTTATGAACGTTAACGTA
ACGACCTTAAACACGGTGGACGCGTACCAACAAGCCCAACATCACGGACACCACCACTTA
GCGATTGGAAACACGATGCTAAACGACTCGTCGCTGCTGTACGGAGTGTACCGATGA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[210-288] 1.75E-23 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[229-289] 20.018 |
| SMART |
Homeobox_dom (IPR001356) - T[231-293] 1.7E-23 |
| CDD |
Homeobox_dom (IPR001356) - T[232-289] 5.0237E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[232-288] 3.9E-19 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[264-287] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NKX22_HUMAN | 72.857 % | 117 | 8.18E-30 |
| NKX21_HUMAN | 43.234 % | 181 | 2.74E-52 |
| NKX26_HUMAN | 64.286 % | 112 | 1.08E-27 |