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TRANSCRIPT CARD

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  1. Clone 'cicl049l13' > 
  2. Transcript 'Boleac.CG.SB_v3.S14....' > 
  3. Clone 'AHC0AAA201YC22' > 
  4. Transcript 'Phmamm.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S585.g10309.01.t

Possible name(s)

Phmamm.CG.MTP2014.S585.g10309

Gene model

Phmamm.CG.MTP2014.S585.g10309

Location

S585 [93,272 / 100,162]

Sequences

Amino acid sequence

Length: 1,194

>Phmamm.CG.MTP2014.S585.g10309.01.p
MITCKQVKETNSEKELANVLRRQCLSNGKEIDPKESAKTLHQLGLVYKEKSPDKISLIQS
VALMTSAVLRQPENADDIKKDLDDVCMHILTLANASKLDTTLVDTAIVEAKQKIAVLRET
VKKELEIIKPISDDLKGNEMEQARKIRVAKIRKIQDYVTETYTSIMQLIANHTLFILGKA
PCKFALVGMGSLAKKEVTPYSDFESIIVLEEKIQKNPNYQNILEYFQWFSTVFQVILVRL
GETILKFLAIPCLNNPLNKEEDWFYDAYTPCGICPDGFAPQASKNPLGRQTKTKKKPWIT
ELIKPVSEMVKYLESEEDLKNGYHLADILTKTSFVAGNFCIYKIFCAKVKNKLSMWPKFN
THVRQKMAKDFEKYSLAHTDTEHHVDLKRFVYRSCSLFVHAVGYLHETTASNSFDIMDEL
LNRGISVITETLHSKIQSSIAVACEIRLRMYSSALSQDDILHQNKYCAMPSCMNELTTCI
GARSVVDCLNVAEELQLYVIRCFKISHVFQLSLVKEVPLNAVNIAKSVKLYGFAVRLVDE
IRRLPEYQNVPSQYILLVSYADCLRGNGEYKRCVKIINANLRNLQKIGLLQFSVSLWLIR
ARCLTALKKYKQALKCYRKVNFFTFFHLSPVTVGLQVHVGMGDCFKKLWRNKKAFKHLKL
AYDEVKDDPMKDKIRDVYFEVLQHYAICLYRLAMHEEAKAVNQNLIEARRQLYVDEESDL
ILNTAFFDIAVSLCHLERFEESLNILEKAWKCVQNISEEIYVGSYSSYIQTKACCLAKLG
KGYEAMSLLSTYFSSDRASKNRFTRHNMWTHLIQILDQCGLYEGCIMCIKKTLAFCSQFK
QTKSLCKEVKQYQQQIKEFQDKIDNYSELKLDKDAKQIMEKDFQVKIITLSRLANNALKH
ENLDEAMAYFTKMETLLPKVEIESVLLSKENGVEFHSMVYCGVSSVLLLEGQHQEAVMYS
KKAFNLPFQLCRRHFKDGSIDATHSINMITCKQVKETNSEKVLANVLRRQCLSNGKEIDP
KESAKTLHQLGLVYKEKSPDKISLIQSVALMTSAVLRQPDNVEAIKQDLNDVCLHILTLA
NASKLDTTLVDIVIVEAKRKIALLRETVKRDLEILQPISDDLKGTKKKKARKIRVAKIRK
IQDYVTETYTSIMQLIANHTLSILGEAPLVFMCFSNDTGSTGGNITQILGDSMS

Nucleotide sequence

Length: 3,585

>Phmamm.CG.MTP2014.S585.g10309.01.t
ATGATTACCTGTAAACAAGTAAAAGAAACAAATTCTGAAAAAGAACTTGCAAATGTGCTA
AGGAGACAGTGTTTGTCAAATGGCAAAGAAATTGACCCAAAAGAATCTGCAAAAACTTTA
CATCAGTTGGGACTTGTGTACAAAGAGAAAAGTCCAGATAAGATCAGTCTCATTCAAAGT
GTTGCTTTAATGACATCAGCTGTGTTAAGGCAACCTGAAAATGCAGATGACATTAAGAAA
GACCTTGATGATGTATGTATGCATATTTTAACTTTGGCAAATGCCTCGAAGTTGGATACC
ACGTTGGTAGACACTGCAATTGTGGAAGCAAAGCAAAAAATTGCAGTGCTCCGTGAAACA
GTAAAAAAAGAACTGGAAATAATAAAACCAATAAGTGATGACCTCAAGGGAAATGAAATG
GAACAGGCAAGAAAAATTAGGGTTGCGAAAATAAGAAAAATACAGGATTATGTTACTGAA
ACTTACACAAGTATCATGCAACTTATTGCAAATCATACACTCTTCATCCTGGGGAAAGCA
CCTTGTAAGTTTGCTTTAGTAGGTATGGGTTCATTGGCTAAAAAAGAAGTTACCCCATAT
TCTGATTTTGAAAGCATCATTGTGTTGGAAGAAAAAATACAGAAAAACCCCAACTACCAA
AACATCTTGGAGTATTTTCAGTGGTTTTCAACTGTTTTTCAAGTTATACTGGTTCGTCTG
GGGGAAACTATACTGAAATTCTTGGCGATTCCGTGTCTTAATAATCCTTTGAATAAAGAA
GAAGATTGGTTTTATGATGCATACACTCCATGTGGAATTTGTCCTGATGGATTTGCTCCA
CAAGCAAGTAAGAACCCATTGGGAAGACAAACAAAGACAAAGAAGAAGCCGTGGATAACT
GAGCTAATCAAACCAGTCAGTGAGATGGTTAAGTACTTGGAATCAGAAGAGGATTTAAAA
AACGGATATCATTTGGCTGATATATTGACTAAAACCAGTTTTGTGGCAGGTAATTTTTGT
ATTTACAAAATATTCTGTGCAAAAGTTAAGAACAAATTGAGTATGTGGCCAAAGTTTAAT
ACACATGTAAGGCAGAAAATGGCGAAAGATTTTGAAAAATATTCCCTGGCACATACTGAT
ACAGAACATCATGTGGATCTAAAACGCTTTGTATACAGAAGTTGCTCCTTATTTGTGCAT
GCTGTTGGCTATTTGCATGAAACTACAGCTTCAAACAGCTTTGATATAATGGATGAACTG
CTAAACCGTGGAATTAGTGTCATTACTGAAACACTACACAGCAAAATACAATCTTCCATA
GCTGTTGCATGTGAAATTCGGTTGAGAATGTACAGCAGTGCATTAAGTCAAGACGACATT
CTTCATCAGAACAAGTATTGTGCGATGCCATCCTGTATGAATGAGTTGACAACATGCATT
GGAGCCCGCTCAGTAGTTGATTGTCTGAATGTTGCAGAAGAGTTACAACTGTATGTTATC
AGGTGCTTTAAAATCAGCCATGTTTTTCAGTTAAGTTTGGTTAAAGAGGTACCATTAAAT
GCAGTAAACATTGCCAAGTCTGTAAAGTTGTATGGTTTTGCTGTGAGACTTGTTGATGAA
ATTCGGAGGCTACCAGAGTATCAAAATGTCCCTTCCCAATATATATTGCTTGTTTCCTAT
GCTGATTGCTTGCGAGGCAATGGAGAATACAAAAGATGTGTAAAGATTATAAATGCTAAC
CTCAGAAATTTGCAGAAAATTGGATTATTGCAATTTTCAGTTTCACTTTGGTTAATACGA
GCCCGATGTTTAACTGCATTGAAAAAATACAAACAAGCTCTAAAGTGTTACAGAAAAGTG
AACTTTTTTACATTTTTTCACTTATCACCTGTTACTGTCGGACTACAAGTTCATGTTGGA
ATGGGTGATTGTTTCAAAAAACTTTGGCGCAACAAAAAGGCATTTAAACACCTAAAACTT
GCATATGATGAAGTAAAAGATGATCCCATGAAAGATAAAATTAGGGATGTATATTTTGAG
GTTTTGCAACATTACGCTATTTGTCTATACCGCCTGGCAATGCATGAAGAAGCTAAAGCC
GTTAATCAAAACTTGATTGAAGCAAGACGCCAACTTTATGTGGATGAAGAGTCAGATCTC
ATACTGAACACAGCATTTTTTGATATTGCTGTGAGTTTGTGTCATCTAGAAAGGTTTGAA
GAAAGTCTCAATATTCTTGAAAAAGCTTGGAAATGTGTGCAAAACATCAGTGAAGAAATT
TATGTTGGAAGTTACAGCTCCTACATTCAGACAAAAGCTTGTTGTCTGGCAAAACTTGGA
AAAGGTTATGAAGCCATGAGTTTGTTATCCACCTATTTTTCAAGTGATAGGGCATCAAAA
AATCGTTTTACAAGGCACAACATGTGGACACATTTAATTCAAATCCTTGACCAGTGTGGA
TTGTATGAAGGATGTATAATGTGTATCAAGAAAACGTTGGCATTTTGTTCCCAGTTTAAG
CAAACTAAATCTCTTTGTAAAGAGGTCAAACAATACCAGCAGCAAATTAAAGAGTTTCAA
GACAAAATAGACAACTACTCTGAACTTAAATTAGATAAAGATGCGAAACAAATAATGGAA
AAGGACTTTCAAGTAAAGATCATCACTCTAAGCAGGCTTGCTAATAACGCACTTAAACAT
GAGAATCTTGATGAAGCTATGGCTTATTTTACAAAGATGGAAACACTCCTCCCAAAAGTT
GAAATAGAGTCTGTATTGCTGTCTAAAGAAAATGGTGTAGAATTTCACAGTATGGTTTAT
TGTGGAGTTTCATCTGTTCTTCTTCTGGAAGGGCAACACCAAGAAGCAGTTATGTACTCC
AAAAAGGCTTTCAATTTGCCATTCCAACTTTGTAGGCGACATTTTAAAGACGGCAGCATT
GATGCAACACACAGCATAAATATGATTACCTGTAAACAAGTAAAAGAAACAAATTCTGAA
AAAGTACTTGCAAATGTGCTAAGGAGACAGTGTTTGTCAAATGGCAAAGAAATTGACCCA
AAAGAATCTGCAAAAACTTTGCACCAGTTGGGACTTGTGTACAAAGAGAAAAGTCCAGAT
AAGATCAGTCTCATTCAAAGTGTTGCTTTAATGACATCAGCTGTGTTAAGGCAGCCAGAC
AATGTTGAAGCAATTAAACAAGACCTTAATGATGTATGTTTGCATATTTTAACTTTGGCA
AATGCCTCAAAGTTGGATACCACACTGGTAGACATTGTAATTGTGGAAGCGAAGCGAAAA
ATTGCATTGCTTCGTGAAACAGTAAAAAGAGACCTGGAAATATTACAACCAATAAGTGAT
GACCTCAAGGGAACTAAAAAGAAGAAGGCAAGGAAAATCAGGGTTGCGAAAATAAGGAAA
ATACAGGATTATGTTACAGAAACTTACACAAGCATTATGCAACTTATAGCGAATCATACA
CTCTCCATCCTAGGAGAAGCACCTTTGGTTTTCATGTGTTTTTCAAATGATACTGGTTCG
ACTGGGGGAAACATTACTCAAATTCTTGGCGATTCCATGTCTTAA

InterProScan

Pfam
GlnD_Uridyltrans_N (IPR005105) - T[149-241] 4.6E-6
Gene3D
TPR-like_helical_dom_sf (IPR011990) - T[525-669] 9.3E-8 - T[675-839] 5.7E-7
SUPERFAMILY
TPR-like_helical_dom_sf (IPR011990) - T[550-796] 1.47E-13 - T[889-1037] 2.59E-5
SMART
TPR_repeat (IPR019734) - T[594-622] 67.0 - T[723-756] 190.0 - T[806-839] 97.0 - T[887-920] 29.0

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value