- Transcript 'Moocci.CG.ELv1_2.S64...' >
- Transcript 'Moocci.CG.ELv1_2.S64...' >
- Transcript 'Phmamm.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S583.g10289.01.t
Possible name(s)
PTPRD; PTPRQ; USH2A
Gene model
Location
S583 [55,721 / 68,131]
Amino acid sequence
Length: 1,337
>Phmamm.CG.MTP2014.S583.g10289.01.p
MNAILYIGRSVIGSTGIFGVSRDFKIYGSLSEGNSNPFTFVQNSVGSSKDGDTFFFDDVE
PLFMSFFSSDEPSDIGFNISYCVDADICRTNVSFCIDSVRGTCVRDGFEKYSCKCNSGFT
GLNCEKELNSTNGEVFVTFTFDVTETWRNNPEYIQNYNIHYTDNLGSTKAIVTSLVNEAN
FNSIRFSVLPFTHYTIELSVGAVGHLFDTATVMLDDSVISLTSAETFPRAPSALSATITG
SHISLAWTAPIEAGRGITIGYQIGTMRSADSCAGYRGLGPQADCQSEMIYNISTGSFGAA
FEIILYREYIFRLRAQTSAGFGGWTSTTAFAALVTIEATCSSSASDTFTVMWQHNHVDGL
ISGYAVTYSSLAGDVNHQFQVGSTETTFTGLDVFTSYTVTVEVIGVIPAIQDPRSTCVIL
TQEAAPTAPRSVALVPLSSSSLVVRWVQPSKLNGILSYYTVNYETLLATLIFGPLIKCAY
RPEDPSSGSAFVVHAAPTSGVKAPNVAASATQVVISYAAPIPVTGDFSYEVRFFVTGTTS
SQTVSSSNLMQTITGLIPATDYTFEVTVSTLVGRGPKTSVTATTDEDIPGLVATPTFTTT
KKSITVNWVEPVAPNGIITAYRVSWISASGENSSPNLTATTTSFVVQGLEVYTDYHITVF
SRNAIGENLGTVASQRTNEGVPLEAVRNVVLTSSSTGVVVSYDPPAVVTGVFAYLLEYRL
VANPAGPFIASPSATAITSLSPSSSYLIRITVSTGAGVGPNITRNFTTEQGIPGNVTNLV
VLAITTTTVTVQWDVPSTPDGFITGYKIMWGPGMSLTVGISVTFYEMTGLEPYTTYNVQV
LAITTAGESDGVTVKAQTAEDVPDPPTLFLFLNANNTFTVTVSHATPLKGLVLFNVLTIS
QDTSECIRVLDLTCYNVTVALPGDQTMYTTDILSASRTFVFSVMANTSVGYSNAVTTTAT
TAASDYYNRSYINLNYLLNYTITNYNLVNNDVGKHVSSNIHDKINTANKRNDFDHITDYN
NKHNFNYITNNCNDIFNQFYRSAKPRSVLANYIEDNVRLVLDTEIGVWATSITQDPIGLY
VAASLSCSSSARKRRNLDPDNKRFIVGQDQTCKRDELEVCNGPLPQNRSYEVAIRLRNVL
FTSELTDFSEPVSILGCLGQCNQRPVCGASSESIKQSECTGQPLASVPCVESQTADGFYE
GNFIISLLVNDVTVINETELQQVLVELDIRTSDADVLNEEDVISTVNFVLSISSVSTNVE
ITQSSYRSVIAIGDHVSSFQMFNRSTGIVNQSALIESLTLLAYRVPALSNQTLDVLTPNV
AARVSFRSNRRSSLLYI
Nucleotide sequence
Length: 4,014
>Phmamm.CG.MTP2014.S583.g10289.01.t
ATGAATGCAATCCTGTACATTGGAAGATCTGTTATTGGGTCTACAGGCATATTTGGTGTA
TCCAGAGACTTTAAGATTTACGGAAGTCTTTCGGAAGGAAACTCAAATCCATTTACATTT
GTGCAAAACTCAGTTGGCTCCTCAAAAGACGGGGACACATTCTTTTTTGATGATGTTGAA
CCACTTTTTATGAGCTTTTTTTCGTCAGACGAACCGTCAGACATAGGATTTAATATCTCC
TATTGCGTCGATGCCGACATTTGTCGAACTAACGTGTCATTCTGTATTGATTCTGTTAGA
GGAACTTGTGTCCGCGATGGGTTCGAGAAATATTCATGCAAGTGTAACTCAGGATTTACA
GGCTTAAATTGTGAAAAAGAGCTCAACAGCACCAATGGCGAAGTTTTTGTTACCTTTACC
TTCGATGTCACTGAAACGTGGAGAAACAATCCAGAATACATTCAAAACTATAACATACAT
TATACTGACAACTTGGGATCTACAAAAGCTATTGTCACATCTTTGGTCAATGAAGCAAAT
TTTAACTCTATCAGATTTTCGGTATTGCCATTCACGCACTACACAATTGAACTGAGTGTA
GGAGCAGTGGGCCACTTGTTCGATACAGCGACAGTTATGTTGGATGATTCTGTCATATCT
CTTACGAGCGCGGAGACTTTTCCTCGAGCACCAAGTGCACTTTCAGCAACAATCACAGGA
TCTCACATCTCACTTGCTTGGACGGCACCAATTGAAGCAGGCCGTGGCATTACTATTGGC
TACCAGATCGGAACAATGCGTTCGGCTGATAGTTGCGCGGGATATCGAGGTTTAGGTCCG
CAAGCAGATTGTCAGTCAGAAATGATTTATAACATCAGCACAGGAAGCTTCGGCGCAGCG
TTTGAAATTATTCTCTACCGTGAATACATATTTCGTCTTCGAGCCCAAACCTCCGCAGGG
TTCGGTGGTTGGACTTCTACGACTGCATTTGCAGCTCTTGTCACCATAGAAGCTACTTGC
TCGAGCTCAGCAAGCGATACTTTTACTGTAATGTGGCAGCACAACCATGTGGACGGGTTG
ATTTCGGGATACGCAGTTACATACAGTTCATTGGCTGGCGATGTCAACCACCAATTCCAA
GTTGGTTCAACGGAGACAACGTTTACAGGACTTGATGTCTTCACCAGTTATACAGTAACT
GTAGAGGTGATAGGTGTTATTCCAGCTATCCAGGATCCGAGGTCCACTTGCGTGATTCTC
ACTCAAGAAGCAGCGCCAACCGCACCCAGATCGGTAGCCCTGGTCCCTCTATCAAGTTCG
TCCCTCGTTGTTAGATGGGTGCAACCTTCAAAGCTGAATGGAATTTTGTCTTATTACACC
GTTAACTATGAAACTCTTTTGGCAACCCTGATTTTCGGGCCACTTATAAAATGTGCCTAC
AGGCCAGAAGACCCTTCATCCGGCAGTGCCTTTGTTGTGCATGCAGCTCCTACCAGTGGA
GTGAAGGCACCGAATGTTGCGGCCAGCGCCACGCAAGTCGTTATCAGCTACGCTGCACCA
ATCCCTGTAACTGGGGACTTTTCGTACGAGGTTCGATTCTTTGTAACCGGTACCACATCG
TCTCAAACTGTCAGCAGCAGTAATTTGATGCAAACTATAACTGGATTAATCCCTGCAACG
GATTACACGTTTGAGGTTACAGTATCCACTTTGGTCGGCAGAGGTCCCAAAACATCGGTT
ACCGCAACAACGGACGAAGACATACCTGGGCTTGTGGCAACACCAACGTTTACAACTACT
AAAAAATCAATCACAGTAAATTGGGTTGAACCGGTTGCTCCTAATGGAATAATTACTGCC
TACAGGGTTTCTTGGATTTCTGCGTCTGGTGAGAATTCGTCTCCTAACTTAACAGCAACA
ACCACCTCCTTTGTCGTCCAAGGATTAGAGGTTTACACTGACTATCACATTACCGTTTTT
TCTCGGAATGCTATTGGAGAAAACTTAGGAACAGTTGCTTCTCAACGAACTAATGAAGGC
GTTCCTCTTGAAGCTGTTAGGAATGTTGTCCTTACGTCAAGTAGTACGGGGGTTGTAGTA
AGCTACGATCCACCGGCTGTGGTCACTGGAGTTTTTGCATACCTGTTGGAATATCGTCTA
GTTGCAAATCCGGCCGGTCCATTCATTGCAAGTCCCAGCGCTACTGCAATAACTAGTTTA
AGCCCATCTTCATCCTACTTGATAAGAATTACTGTAAGCACTGGTGCAGGTGTCGGACCG
AATATAACAAGAAATTTTACTACCGAGCAAGGAATTCCAGGCAATGTAACAAACCTTGTA
GTTTTGGCAATTACAACTACAACTGTCACCGTACAATGGGATGTGCCTTCAACCCCTGAC
GGCTTTATAACTGGCTACAAGATTATGTGGGGACCAGGAATGTCATTGACCGTCGGCATT
TCTGTTACTTTCTACGAAATGACGGGGCTAGAACCTTACACAACTTACAACGTGCAGGTC
TTGGCCATAACAACTGCTGGAGAAAGTGACGGTGTTACAGTGAAAGCACAAACTGCCGAA
GACGTACCCGATCCACCAACTCTCTTCTTGTTTTTAAACGCAAACAATACTTTTACTGTG
ACTGTTTCCCATGCAACACCACTAAAGGGATTAGTACTATTTAACGTGCTCACTATAAGC
CAAGATACCTCTGAATGCATAAGAGTGCTTGATCTAACGTGCTACAACGTTACAGTTGCA
TTACCGGGCGATCAAACAATGTATACTACAGATATTCTGTCAGCTTCTAGAACTTTTGTA
TTTTCTGTGATGGCAAATACGTCTGTTGGATATAGCAACGCAGTTACAACTACAGCAACC
ACTGCTGCATCTGACTACTATAACAGAAGCTATATTAACCTCAACTACCTCCTCAACTAC
ACCATTACCAACTACAACCTTGTCAACAACGACGTCGGTAAACACGTTTCCAGTAACATC
CACGACAAAATTAACACTGCCAACAAACGCAACGACTTCGACCACATTACCGACTACAAC
AACAAACACAACTTCAACTACATTACCAACAACTGCAACGACATCTTCAATCAATTTTAC
CGCTCAGCAAAGCCAAGGTCAGTACTCGCAAACTACATAGAAGACAATGTGCGCCTGGTT
TTAGATACGGAAATAGGTGTATGGGCAACATCTATTACACAGGACCCGATTGGTCTCTAT
GTTGCTGCATCCTTGTCTTGCTCCTCATCGGCACGAAAACGTAGAAATCTCGATCCCGAT
AATAAACGTTTTATCGTTGGTCAGGACCAGACATGCAAGAGAGATGAACTAGAGGTGTGC
AACGGACCCTTGCCACAAAATCGTTCTTACGAAGTTGCGATTCGCTTAAGAAACGTATTA
TTCACATCCGAGTTAACAGATTTTTCTGAACCAGTCTCCATTTTAGGTTGCCTTGGACAA
TGCAATCAGCGTCCTGTTTGTGGAGCTTCATCCGAAAGCATCAAGCAATCTGAATGCACA
GGTCAACCTTTGGCATCAGTTCCATGCGTTGAAAGTCAAACGGCAGATGGATTTTATGAG
GGAAACTTTATTATTTCTTTGTTGGTGAATGATGTGACAGTAATTAACGAAACTGAACTG
CAACAAGTATTAGTGGAGCTTGATATTAGAACTTCAGATGCTGATGTCTTGAACGAAGAA
GATGTGATCTCAACTGTCAATTTTGTGCTGTCTATCAGTTCAGTTTCAACAAACGTTGAG
ATTACTCAGTCTTCGTACCGAAGCGTGATTGCCATTGGTGACCACGTGAGCAGTTTTCAG
ATGTTCAATCGGAGTACAGGGATTGTTAACCAGTCGGCTCTTATTGAATCACTAACTTTG
CTAGCTTACCGTGTACCGGCGCTTTCAAACCAAACATTGGACGTCTTGACTCCAAACGTT
GCGGCAAGGGTAAGTTTCCGTTCCAACCGACGATCTTCACTTCTTTACATATAA
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[84-125] 13.692 |
| Pfam |
EGF-like_dom (IPR000742) - T[100-122] 1.1E-4 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[113-124] . - T[113-124] . |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[149-330] 6.04E-9 - T[339-464] 1.29E-16 - T[507-678] 3.17E-25 - T[689-850] 4.38E-27 - T[860-961] 3.44E-5 |
| Gene3D |
Ig-like_fold (IPR013783) - T[216-337] 1.4E-6 - T[338-407] 7.9E-8 - T[414-489] 1.4E-6 - T[493-586] 4.4E-9 - T[587-674] 3.4E-14 - T[675-766] 6.0E-8 - T[767-860] 1.3E-18 - T[861-966] 2.0E-5 |
| SMART |
FN3_dom (IPR003961) - T[228-322] 0.014 - T[330-408] 21.0 - T[426-575] 1.5E-6 - T[589-668] 5.8E-7 - T[683-759] 0.002 - T[773-849] 5.3E-14 - T[863-952] 57.0 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[332-424] 8.979 - T[497-587] 11.874 - T[588-684] 16.182 - T[685-771] 8.071 - T[772-865] 19.866 - T[866-965] 6.099 |
| CDD |
FN3_dom (IPR003961) - T[339-401] 0.0054991 - T[589-667] 2.76651E-10 - T[684-768] 3.71618E-4 - T[773-850] 2.59487E-15 |
| Pfam |
FN3_dom (IPR003961) - T[340-403] 8.2E-7 - T[596-666] 1.4E-10 - T[775-849] 2.4E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| USH2A_HUMAN | 23.846 % | 110 | 3.31E-24 |
| PTPRQ_HUMAN | 26.403 % | 128 | 1.16E-29 |
| PTPRD_HUMAN | 23.782 % | 91.7 | 1.94E-18 |