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  1. Transcript 'Phmamm.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S579.g10250.01.t

Possible name(s)

PAPD4; ZCCHC11; ZCCHC6

Location

S579 [60,907 / 77,396]

Sequences

Amino acid sequence

Length: 1,542

>Phmamm.CG.MTP2014.S579.g10250.01.p
MSGRSNVIVGPTASQETKTKDANPQAKNSGNSHHDKKPFNNKKAKSKTRPGSVSTDRHQT
PNGVVALQKEKGFLPTDPIGSQPRTLKSEMFAKCGKVSQPRFPKFSNTRNEGKALTPDRP
VFNGRNFHHPSSKSGNQQSPRQTGTLIDSLFKPKPTEDKPSQSADVFKQLFPNGKPNGIK
QNLRQKSDHAISPPVDVPVRISHSAEAITSNWTPSQPTSDAKDSVKDKDPKKSSASLGGI
SQSPVTNGDEVGQNGKRKRNKRPKKKKPKDEVNNEAANEAKPPQSTSETHHSVKEASTSQ
IKTNQTQQVVVNNQLPPAPNGNLEQLGLQQAATRLTRDYIVSLEKKSSQFPEAKFVCKLC
NYHLDSVILAHRHIKEKRHRKLWKEKKQDEMLKEISLPPPQALNVLQNLLVEKVLKGAVL
SADDVKLRKSVVQKLDDLISKQMTGSMVVMYGSSISGFGFKSSDINVDLQYPSSTKAPNA
LLRVLDILERSKGQYKDVNADFRAKIPRIEFTDVATSLPIRLSTNNEFAITTTRLLMFYA
ALDPRVLQLSMVFRTWAQLCKLDRQHEGSLPPYAFVLMTIFFMQKQNFLPVLHEIISPHD
MDTILSMSMNCAQLVSKGDTLWYIPSPAPTCDSTDRVNSQGTEESGNESEPDATATDGTD
AADSADSRSEQTDVVSEKRQETPLKPVSLMPECETPLKPVSLMPECGGRDEGVALLWLKM
LKFFALEYNIENLIISVRHSSDVKREDRNWGKKRVAVLDPYLTKRNLCRSMNSQNVFSYM
MTRLKAAVLYFHGSPRKQVKRDIIAPATMTKQSVEKCVKDLITEMIDGVESQINNTDVLT
EATVSPDSPTQQKNLDAQEVEDGSAIIYEYKFTRDVITEGNNPVVVCGLCKKEGHVREKC
PDEVQTHKLHALPNLTPELRDMLDRVSQSVMGLYMPSREELNQRQHICSNLTRYLQYNYN
SHSTMQLFGSSKNGFGFKGSDLDICLTLDNNDNGEGLDFVSIIEDVARCLRRCGDLRGIL
PITTAKVPIVKFEHRSTGLEGDISLYNLLAQRNTLMLSCYANVDERCRILGYVMKAFVKR
CHIGDASRGSLSSYAYTLMVIFFLQQRSPAVLPVLQQLDTDGTKEVVVDGWNSWFFDDLN
DLLDTDGTQEVVVDGWNSWFFDDLNDLEWTSKFISIEDPFDLNHNLGAGVSRKMTNFIMR
VFMKARQHFGNLPKAHIPHLREVSYFFDAKTLMDGEEAPNDRCCRICGKIGHFVRTCPKS
RRRKRDGDVDEDGMSEVKCFYCGEMGHIKKDCQALKEDNQKVPTRRQISGESPNKMGGRP
IPANRNSPMNHGPPTPARYETGRSPSYNHLANQSPAERYGKTNKRLPLDASPSTNSRDQA
NKNTPRARKNSSGAATPSGQPSPSAGYRHDQINDNGKHVPSRAKSGGKWKPFPNQQQLHV
TMPSPNQLSHSPSNEAQAGASHQRSIAQVSSPQSMPTLSQIESQMFSNSPREKDRKNAGS
WSVFPCSKLSLALLFLFVAVAWKTLNFMTQRRVNSDFEAFEM

Nucleotide sequence

Length: 4,629

>Phmamm.CG.MTP2014.S579.g10250.01.t
ATGTCTGGCCGCAGCAATGTGATTGTGGGCCCAACAGCATCTCAAGAGACAAAGACCAAA
GATGCAAACCCACAAGCAAAAAATTCTGGAAACTCACATCATGACAAAAAGCCGTTTAAC
AACAAAAAAGCTAAATCTAAGACAAGGCCCGGGAGTGTTTCAACTGATCGACATCAAACA
CCCAATGGTGTAGTAGCTCTACAAAAAGAAAAAGGTTTTCTTCCTACAGACCCAATTGGA
TCTCAGCCAAGAACTTTAAAAAGTGAGATGTTTGCAAAGTGTGGGAAAGTTTCACAGCCC
CGGTTTCCAAAATTTTCAAACACCAGAAATGAAGGAAAAGCGCTGACTCCAGACAGACCA
GTATTCAATGGAAGAAACTTTCATCATCCATCCTCAAAGTCTGGAAACCAGCAGTCACCA
AGGCAGACTGGCACATTAATTGACTCCCTGTTCAAGCCCAAACCCACTGAAGACAAGCCT
TCTCAGTCTGCTGATGTGTTTAAACAACTTTTTCCCAATGGAAAACCAAATGGCATCAAG
CAGAACTTACGACAAAAATCAGATCATGCCATATCGCCTCCAGTTGATGTACCAGTTCGG
ATAAGCCATTCAGCAGAAGCAATTACAAGCAACTGGACACCAAGTCAACCAACATCTGAT
GCTAAGGACAGTGTTAAAGATAAAGACCCAAAAAAGAGCTCTGCTTCTTTGGGTGGAATA
TCACAGTCACCTGTCACTAATGGGGATGAAGTTGGTCAGAATGGGAAAAGAAAGCGTAAC
AAAAGACCAAAAAAGAAAAAGCCGAAAGATGAAGTCAACAATGAGGCAGCAAATGAGGCT
AAACCTCCCCAATCTACATCAGAAACACATCATAGTGTTAAGGAGGCCAGCACCAGCCAA
ATAAAAACCAACCAAACCCAGCAAGTTGTTGTGAACAACCAACTACCACCAGCTCCGAAT
GGGAACCTAGAGCAACTTGGTCTTCAGCAGGCAGCTACTAGACTCACTCGGGATTACATT
GTTTCCTTGGAAAAGAAGTCGTCACAATTTCCTGAAGCTAAGTTTGTGTGCAAACTGTGT
AATTACCATCTTGATAGTGTTATTCTTGCTCACCGCCACATAAAAGAAAAACGACACCGA
AAATTGTGGAAAGAGAAGAAACAGGATGAAATGTTAAAGGAGATTTCCCTCCCGCCACCA
CAAGCCTTAAATGTATTGCAAAATCTGCTTGTTGAGAAAGTTTTAAAGGGAGCTGTGCTA
AGTGCTGATGATGTGAAGTTGCGAAAATCTGTTGTGCAAAAACTGGATGACCTGATAAGC
AAGCAGATGACAGGATCAATGGTTGTCATGTATGGTTCATCCATAAGTGGATTTGGATTT
AAATCAAGTGACATCAATGTTGATCTTCAGTATCCTTCCTCCACCAAGGCCCCTAATGCC
CTCCTAAGAGTTCTTGACATCCTGGAGCGTTCCAAAGGTCAGTACAAAGACGTCAACGCC
GACTTTCGCGCCAAGATTCCTCGCATCGAATTCACAGATGTCGCAACTTCTCTGCCTATC
CGACTAAGCACTAACAACGAGTTCGCTATCACCACCACTAGGCTGCTTATGTTCTACGCC
GCTCTTGATCCCCGCGTACTGCAACTTTCCATGGTGTTTCGGACGTGGGCCCAACTGTGC
AAGTTGGATCGACAGCACGAAGGGTCGCTACCTCCATACGCATTCGTTCTTATGACAATC
TTCTTCATGCAGAAGCAAAACTTTTTACCAGTGTTACACGAGATCATTTCTCCACATGAT
ATGGACACAATCTTGTCCATGTCCATGAATTGTGCGCAACTTGTAAGCAAGGGCGACACC
TTATGGTACATTCCTTCTCCTGCGCCAACTTGTGACTCTACTGATCGCGTGAATTCACAA
GGAACAGAAGAGAGTGGGAATGAAAGCGAACCGGATGCCACAGCCACCGATGGAACCGAT
GCGGCCGACTCCGCCGACAGCCGGTCCGAGCAAACCGACGTCGTGTCAGAGAAACGTCAA
GAGACTCCTCTAAAACCGGTTTCGCTAATGCCGGAGTGCGAGACTCCTCTAAAACCGGTT
TCGCTAATGCCGGAGTGCGGTGGGCGGGACGAGGGTGTGGCACTTCTCTGGTTAAAGATG
CTCAAATTCTTTGCTCTTGAATACAACATTGAAAATTTGATAATTTCAGTGCGTCATTCA
AGTGACGTCAAACGTGAGGACAGAAACTGGGGTAAGAAGCGAGTTGCTGTACTCGATCCG
TACTTAACTAAACGCAATCTCTGTCGATCAATGAACTCGCAGAATGTCTTTTCGTACATG
ATGACTCGGCTCAAAGCAGCAGTTCTCTACTTTCATGGTTCACCGCGCAAGCAAGTCAAG
CGCGACATTATCGCACCCGCTACTATGACGAAGCAATCTGTAGAAAAGTGCGTAAAAGAT
CTGATCACAGAAATGATAGACGGTGTCGAAAGTCAGATCAACAATACTGATGTCCTCACC
GAAGCGACAGTATCACCCGACTCTCCCACCCAGCAGAAAAACCTGGATGCTCAAGAGGTT
GAAGACGGAAGTGCAATAATATACGAGTACAAGTTCACACGTGACGTCATCACGGAGGGG
AATAACCCGGTGGTGGTTTGTGGATTGTGCAAGAAGGAAGGTCACGTGAGAGAGAAGTGC
CCAGATGAAGTGCAAACCCACAAACTCCATGCACTCCCGAATTTGACCCCTGAACTGCGG
GATATGCTTGATCGAGTTTCGCAGTCTGTCATGGGTCTGTACATGCCTAGTCGTGAAGAA
CTCAACCAGCGTCAACACATTTGCTCAAACTTAACACGTTACCTGCAATACAACTACAAC
TCCCATTCCACAATGCAACTGTTCGGCTCGTCCAAGAACGGTTTCGGATTTAAAGGCAGC
GATCTTGATATATGCCTCACCCTCGACAATAACGACAACGGAGAGGGTCTCGATTTCGTA
TCGATCATTGAAGACGTTGCACGTTGTCTGCGAAGGTGCGGAGATTTGCGTGGCATCCTC
CCCATCACAACAGCTAAAGTTCCCATTGTGAAATTCGAACATCGCTCTACGGGTTTGGAG
GGAGACATCAGTCTGTACAATCTGCTAGCGCAGCGGAACACTCTGATGCTTTCTTGTTAT
GCGAACGTCGACGAACGCTGTCGTATTCTCGGTTACGTCATGAAGGCATTCGTCAAGCGA
TGTCACATCGGTGATGCGTCACGTGGCTCTCTGTCGTCATACGCGTACACACTGATGGTG
ATCTTCTTTCTCCAACAGCGGTCTCCTGCTGTATTACCTGTTTTGCAACAACTGGATACA
GACGGTACGAAGGAAGTTGTGGTGGATGGTTGGAACTCGTGGTTTTTCGACGACCTTAAC
GATTTGCTGGATACAGACGGTACGCAGGAAGTTGTGGTGGATGGTTGGAACTCGTGGTTT
TTCGACGACCTTAACGATTTGGAGTGGACTTCAAAGTTTATTTCAATCGAGGATCCGTTT
GATCTCAATCACAACTTGGGAGCTGGCGTATCACGAAAGATGACAAACTTCATCATGAGA
GTTTTCATGAAAGCGCGACAACACTTCGGGAATCTCCCTAAAGCTCATATTCCTCACCTG
AGAGAAGTGAGCTACTTCTTTGATGCGAAGACACTAATGGACGGGGAAGAAGCACCGAAC
GACAGATGTTGTCGAATCTGTGGAAAGATCGGACACTTTGTGAGAACCTGCCCCAAGAGC
CGACGAAGAAAGAGGGACGGAGACGTCGATGAGGATGGCATGAGTGAAGTTAAATGTTTC
TATTGCGGTGAAATGGGTCACATCAAAAAAGATTGCCAAGCACTAAAGGAAGACAATCAA
AAAGTTCCGACTCGGCGTCAGATAAGCGGCGAATCCCCAAATAAAATGGGTGGACGTCCC
ATCCCAGCGAACCGCAATTCTCCAATGAACCACGGACCACCTACACCAGCAAGGTACGAG
ACGGGAAGAAGTCCTTCTTATAATCACCTTGCAAACCAGAGTCCTGCAGAGCGATACGGA
AAAACCAACAAACGGCTACCACTTGATGCGTCACCTTCAACCAACAGCCGCGATCAAGCG
AACAAAAATACTCCCCGAGCCCGTAAAAATTCGAGTGGTGCGGCGACACCCAGTGGACAA
CCATCTCCAAGTGCGGGATATCGGCATGATCAGATTAACGATAATGGCAAACACGTGCCT
TCCAGAGCTAAATCTGGGGGCAAATGGAAACCGTTTCCCAACCAGCAACAGCTGCATGTT
ACAATGCCCTCTCCAAACCAGTTGTCTCATTCACCAAGCAACGAGGCCCAAGCTGGCGCC
TCTCATCAACGGTCTATAGCCCAAGTTAGCTCTCCACAAAGCATGCCAACTCTCAGTCAA
ATCGAATCGCAGATGTTTAGCAATTCGCCCCGTGAAAAGGACCGAAAAAATGCAGGTTCG
TGGTCGGTTTTTCCTTGTTCAAAATTATCGCTTGCTTTGTTGTTTCTGTTTGTGGCTGTT
GCTTGGAAAACGCTAAACTTTATGACACAGCGTCGTGTGAATTCTGATTTCGAAGCATTT
GAAATGTAA

InterProScan

SMART
Znf_CCHC (IPR001878) - T[886-902] 0.15 - T[1243-1259] 0.012 - T[1278-1294] 1.9E-4
SUPERFAMILY
Znf_CCHC_sf (IPR036875) - T[1236-1294] 2.56E-8
ProSiteProfiles
Znf_CCHC (IPR001878) - T[1244-1259] 9.241 - T[1278-1292] 10.23
Pfam
Znf_CCHC (IPR001878) - T[1278-1293] 5.8E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TUT4_HUMAN 41.522 % 434 4.01E-127
TUT7_HUMAN 49.522 % 410 2.68E-119
GLD2_HUMAN 26.738 % 125 9.28E-30