Login
Help

TRANSCRIPT CARD

Submit your Data

  1. EST 'AHC0AAA233YA04_RM1' > 
  2. Transcript 'Haaura.CG.MTP2014.S2...' > 
  3. Transcript 'Phmamm.CG.MTP2014.S5...' > 
  4. Transcript 'Boschl.CG.Botznik201...' > 
  5. Transcript 'Phmamm.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S555.g10027.01.t

Possible name(s)

BBS4; IFT88; TTC8

Gene model

Phmamm.CG.MTP2014.S555.g10027

Location

S555 [38,931 / 47,566]

Sequences

Amino acid sequence

Length: 572

>Phmamm.CG.MTP2014.S555.g10027.01.p
AVTRLAFLSSYFIDPAVKKTMSTHSETTSSGAGEVKAESESEHYQPPTLSVAAGPKRKIK
ARKAAKLPSIERRNWLIHSHFIRKEFDGCKSLIQEQLVETNGQCEYAIYIQALMLRSDGE
IQQSLELFQACHQINPKNPDNMKQIAKNLILLGKHKSAIECYNHATDLGERDWEICHCLG
VCYQFLKQLDQAEQCFLEALSKGKHTVTYSVLAKLYLEQQETKKAIDILQKGVDFAPENT
DLLTSLGLLHLRNESFHRAFELLGQALTYDPENYKAILAAGSLMQKHGDFDVALTKYRVA
AQRVPESSSLWNNIAMCFFGKKKNVAAISCLKRANYLSPFDWRILYNLSLLHLTMQQYAS
AFQFASTAIGLKSDHGPLYMLLAVGLANLGQDDNAEQAYLKAMELNSNDPHTLINYCVFL
HNRGNSQKAANILGNFHKLSDDKSVSVEKELFEISKRLSAVLNVGEKIVVEKEKVEKHRK
KKATKKTESVSSLAEMEQQNHIEEQAAPSGNLKPKKLAPLGTLSSVSSPSTLPPLRSPMG
PLNPSDLLSQMPAVPEHDPERRSTKHKQPVAE

Nucleotide sequence

Length: 3,686

>Phmamm.CG.MTP2014.S555.g10027.01.t
GCGGTTACGAGATTGGCTTTTCTGTCGAGTTATTTTATTGATCCAGCTGTGAAAAAAACA
ATGTCTACGCATTCAGAAACTACTTCTAGTGGTGCTGGTGAAGTGAAAGCAGAAAGTGAA
AGTGAGCATTACCAACCGCCAACTTTATCGGTAGCAGCTGGCCCAAAGCGTAAAATTAAA
GCTAGAAAAGCTGCCAAACTTCCAAGCATAGAAAGAAGAAATTGGTTGATTCATTCACAT
TTTATCCGCAAAGAGTTTGATGGCTGTAAGAGCCTTATTCAAGAACAATTAGTGGAAACC
AATGGACAGTGTGAATATGCCATATATATTCAGGCATTAATGTTGAGAAGTGATGGTGAG
ATTCAACAATCTCTTGAGTTGTTTCAAGCTTGTCATCAAATCAATCCTAAGAATCCAGAT
AATATGAAACAGATTGCCAAAAATTTAATTTTACTTGGAAAACACAAAAGTGCTATTGAG
TGCTACAACCATGCCACAGACTTGGGTGAAAGAGATTGGGAAATTTGCCATTGTCTTGGT
GTATGTTACCAGTTCTTAAAGCAACTTGATCAGGCTGAGCAATGCTTTTTGGAAGCATTA
TCCAAAGGAAAACATACAGTAACATACAGCGTACTTGCAAAACTGTATTTAGAACAACAG
GAAACCAAAAAGGCAATTGACATTCTGCAAAAAGGTGTCGATTTTGCTCCCGAGAATACT
GATCTTCTCACATCTCTTGGTCTTTTGCATTTGCGAAATGAGAGCTTCCATCGTGCTTTT
GAGCTTCTTGGGCAAGCATTGACCTATGACCCTGAAAACTACAAGGCTATACTGGCAGCT
GGTTCTCTCATGCAAAAACATGGAGATTTTGATGTAGCGCTCACTAAGTACAGAGTAGCA
GCACAAAGAGTACCTGAAAGCTCTTCATTGTGGAACAACATTGCAATGTGTTTCTTTGGA
AAAAAGAAAAATGTTGCAGCCATTAGCTGTTTAAAACGAGCAAACTACCTTTCACCATTT
GATTGGAGAATTTTGTATAACCTCAGTCTACTCCATCTCACCATGCAACAATATGCAAGT
GCTTTTCAATTTGCATCCACTGCCATTGGCCTAAAGTCAGATCATGGCCCTCTGTACATG
TTGTTAGCAGTGGGACTTGCAAACCTGGGACAAGATGATAATGCGGAACAGGCATACCTA
AAAGCAATGGAACTCAATTCGAATGACCCCCACACCCTAATTAACTACTGTGTGTTTCTT
CACAATCGGGGCAATTCACAAAAGGCTGCAAATATTTTGGGAAATTTCCATAAACTTAGT
GATGACAAATCTGTGTCAGTTGAAAAAGAGCTTTTTGAAATCAGTAAACGCTTGTCGGCT
GTCCTTAATGTGGGTGAAAAAATTGTTGTGGAGAAAGAGAAAGTTGAAAAGCACAGAAAA
AAGAAAGCAACAAAGAAGACTGAAAGTGTATCATCTCTTGCTGAAATGGAACAACAAAAT
CACATAGAGGAGCAAGCTGCACCATCAGGCAATTTGAAGCCAAAAAAACTTGCTCCATTA
GGAACACTTTCATCAGTATCAAGCCCTTCTACTTTACCCCCATTGCGATCCCCGATGGGC
CCTTTAAACCCCAGTGACCTTCTATCGCAAATGCCCGCAGTTCCCGAACATGATCCAGAA
CGAAGAAGCACCAAGCACAAGCAACCTGTGGCTGAATAACTAGATTATTTTATGCTGTAT
ACTATTTTTTTATTGTTGTGATTTTGAGATTTAAAAATTGAAGATGTAAAATTTTTAACT
ACCAACGGTTTTGTGGTGAGATGTCTCAATATGCGATGCCAAACTAAAAGGATGGCATAG
CACAGGGGTGAGGAACCTGCAGCCTTTTAGGGCACTAAGTGCAGCCTTCGATGTCAGAAT
ACGATTTAGGATGTTGATAATACACACTGCACCAGGCGCTAAAAACTAGACAGAAACGTA
TTTTTTTACCTTTATTCCACATTACTATTTGATCGGTTCTAGGGCAGCAGTTTTGAAACT
AGAGCAAAATGTTTGTGTACTGGTACACAAAGCGATATCCGTAGAACTGCCAAGAGACCA
AGGTTCTACAATCTTACTTGTGTTGCAAAAGAACAATTGTTTGCGCATAATCGAATGTCT
TAAACTCGTCTGTGATGTCACAAGCTGCTCTTAGATTGATATTGATAAACAAGCGAGTTT
CTACGTTAATAAAATCCTGAATGTTGTAGTGAGGGTGGAAATGTAGTGAGGAATTTTATT
TAGCTTGGACAGTAAGTCCAATAGCCACTGTCCTTGGCCTGAGAAATAGTCTGTGCGGCC
TAAACGAGTGTCGATAAACCGTTTGGCGGCCTTCAGAGACAAATAGGTTCCCCATCCCTG
GCATAGCACATATAGCCATGAAACAAAAATTTTGGCAATGTTTTCATAACCTTGATGTGT
TACAGTGTAAAACACAACATTTGACTACGACTGAACAAACTACAAATTGTTTCAAAACTA
CCCATGTTAGCTAAATAGTGCGGTAACTAGCCCTTTAGAATAAAACAACAGATATGCTAA
AATTGTATAAACTACAAATTAGCCTTTTTTATCTCTACATCAGCAATGGTTCCATGATCC
GAGATTTGGTTTTTGAGATTGAGATAAAAAACAGTTACTCTATATTTATTACTAATATGC
TTTTGTATACACTGGGATTGCAAAAGTTTAGAATTATTTAAGACTCATAATATCATATTT
ATTGTCATGTTATAAGTATCAATTTTACCGCACAGTTTCGACCAGAAAAAATAATAATAA
AGACTTTACTGTCATTACCCCAAATGGTTTATTTGATTTCTTAAGCCTGACCAAAGATGT
ACTTAATAGCTAAACAAGAAAACATGCCTTCCAAGTCCAACAGTACTATATTGTAAAATG
CATTTAAAAGTGAAATGCACTATAGAAAAAACAATGCTCTGGTGCTTGTTCAGTCTTGTG
TCACTGCAAAAAAGTGATCATTAACAGTCATGTGGTCACTTCACAGCCTCTGTAATAAAA
TCGTCCAAATCTTTGTCTTCAATATTTCCTTCAAACTTGTTGACAACTTCACCCTTCTTA
AACAACATGACTGTGGGGACTGCCCTGACCTGCAATTAGGTTCAGCATTACCAAAAAAGA
AATATGTTTTAGTCTTATACATTCTAATATTATTAGGCAGCTAAAGATGAGCATAAGTCC
AATGTTAAAATAACCTTTTCTTCCAAGGCCTTTTGCCGTAGCCGCCACTCTTTGACACAT
TTCAGATTTTTGTAATATTCATCACAAAAGCAGATACAACAATAAATTATTTCTACAGCA
TGGTTTCACACATAAATGTAATTGACAATGGTGTTAACATCAGAGTCACAGTAAAAAATA
TGCTAGCAATACATTAATTATTTGATTGGTGCACCTTTCACCTCAAAGGTGGTGCACTAA
ATCAAATCTTGTTAATTCAAATTTGGCACAGAAACAGAAAAAATATTTTAGCCAGGATTT
TGATATGTTACCTACTTACCTTGTATGTCATTGCTACAAGACCAAGATCATCCACATCAA
CTTTCGCGAGTGTAACTTTTCCTTCCTGTTTATCAACTGCATTTTCTAACCTGGGTCCCA
AGATTTTACAAGGCCCACACCATCTG

InterProScan

Gene3D
TPR-like_helical_dom_sf (IPR011990) - T[90-205] 1.6E-19 - T[206-463] 1.4E-41
ProSiteProfiles
TPR-contain_dom (IPR013026) - T[105-443] 43.35
ProSiteProfiles
TPR_repeat (IPR019734) - T[105-138] 7.169 - T[139-172] 6.284 - T[206-239] 9.706 - T[240-273] 10.089 - T[274-307] 7.375 - T[308-341] 6.166 - T[342-375] 6.254 - T[376-409] 7.493
SMART
TPR_repeat (IPR019734) - T[105-138] 10.0 - T[139-172] 59.0 - T[173-206] 0.062 - T[207-239] 23.0 - T[240-273] 1.0 - T[308-341] 12.0 - T[342-375] 16.0 - T[376-409] 0.33
SUPERFAMILY
TPR-like_helical_dom_sf (IPR011990) - T[109-231] 3.92E-19
Pfam
TPR_repeat (IPR019734) - T[176-201] 0.05 - T[378-409] 0.014

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
BBS4_HUMAN 53.986 % 474 5.2E-163