- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S493.g09409.01.t
Possible name(s)
CHRD; CHRDL1; CHRDL2
Gene model
Location
S493 [98,824 / 107,241]
Amino acid sequence
Length: 959
>Phmamm.CG.MTP2014.S493.g09409.01.p
MNVVTKLSLMTCYFVIGQVECFFPLRPEMGRGGPIRSGVRGCTFGLKYHAIGSSWHPNLG
NTFGIMFCVTCHCVKVEEPMASPFQVGRSKVMCHDVRKDCEPVTCKNAKVPRGECCKVCP
DDVDKEIEKSISSKAVEGDLSARVVSILGDKAINDEDSKSSGDSKTKHFVSLLTSASGGA
LMRATFTLHRGNLHFTLHHPFSERPNTVELLNHDDTILYDHVSGESPKPQQSIVCGVWRN
LPKNVLHSLDRRALQLKVTFDTPGSDSAENATSTGRIIKHRALSKETFSSLLSTNSNPLD
GSRGALVMMTLGRQRFTRLHFAVVFRKNSSLSNENKVALKLFNENGIVLRKTEKSLSVDE
NEFGDVWPTNSEILRRLGEGTLHLELTVGADGSDSFTGNVTARVTCNLLQVVLSGNGCAQ
KASTGAAGSAIVVVNPDNTVSYKMSLVGLSSAVTSVSFLGDYRKKRTRVIADVTSQYENG
KAEGRLETLNGKELHLLLSEFVRVRIETEQSNSGELGGKVTSFLFGGHLARYRGLPTPLA
GALVRPPVFTGSAGHAWLELNDQCHLYYEIVVDGLSTHTDSSVAAHLHGLAEISGSEINH
KQLLKGFYGSEARGVLQVMNSALYEQLDRGTAFIQIATKRNPQGEIRGRIHIPNQCSQVG
GNTKVNSQDAILPENNLKVASVAPPTEITTRFGDLHAVVHDGAAPELTQRRLEMDPMSCY
SEGRWRADGSQWSPSYDQRCTKCVCEGGSVVCDPIYCPRLTCSRPVALENECCPVCNDGF
GSIPAKEEGLPIGSLFQSTLDLHRQNIGGLPQVKEVTEGCYDENDGKMHSYGSSWTPYFP
MFGLVACLNCTCRMSGEITCGKVTCPPVTCKNPRRESRNQCCKTCPEETTGFSTRSRDPR
MQDDSSVGMCSFGRDLYARGDKWSVTVPTMIKRDCVECECLYSATGGLKYKCKWKCARN
Nucleotide sequence
Length: 3,347
>Phmamm.CG.MTP2014.S493.g09409.01.t
TGCAAATTTGCTTCGCTGTATTTCAGTTGAAGTAAAAACAAGATTATAGACAGTGAGTGA
GTGATTTTTGTTGGCCACGTTTTAAAGTTTCATTAGATCCGAGATTCGATTTCAAACTGT
GGAATCTCTGATCGTCACAATGAACGTCGTTACAAAGCTGTCACTGATGACGTGTTATTT
TGTGATTGGTCAAGTCGAGTGCTTTTTCCCATTACGTCCTGAAATGGGCCGAGGCGGACC
AATCAGATCAGGGGTCAGAGGTTGCACTTTCGGATTGAAGTACCATGCGATTGGTTCATC
CTGGCATCCAAACCTCGGTAACACATTTGGGATCATGTTCTGCGTCACGTGTCACTGTGT
CAAGGTAGAAGAACCCATGGCGTCACCGTTTCAAGTGGGAAGGTCAAAGGTGATGTGTCA
TGACGTCAGAAAGGATTGCGAACCAGTGACGTGTAAAAACGCAAAAGTCCCAAGAGGAGA
ATGTTGCAAAGTTTGTCCTGACGATGTAGATAAAGAGATCGAGAAAAGCATTTCATCCAA
AGCGGTAGAAGGAGATCTTTCTGCTCGCGTTGTCTCGATTTTAGGCGACAAAGCAATTAA
TGACGAGGATTCGAAATCAAGCGGAGATTCGAAAACTAAACATTTCGTGTCCTTGCTTAC
CAGCGCCTCTGGTGGTGCGTTGATGAGAGCAACTTTTACGCTTCACAGAGGAAATTTGCA
TTTCACTCTCCATCATCCATTCTCCGAGCGACCAAACACGGTGGAGTTACTTAACCATGA
CGACACGATTTTGTACGATCACGTGAGCGGGGAATCACCTAAACCGCAACAGTCGATCGT
GTGTGGGGTTTGGCGAAATCTCCCGAAAAACGTCTTGCACTCATTGGATCGACGCGCTTT
GCAGTTGAAAGTGACTTTTGACACGCCCGGTAGTGATTCTGCCGAGAATGCAACCAGCAC
AGGGCGTATCATAAAACACAGAGCACTAAGCAAAGAAACTTTTAGTTCCCTTCTTTCCAC
AAACTCGAATCCGCTAGATGGCAGCAGAGGCGCCCTTGTGATGATGACGTTGGGAAGACA
AAGATTTACTCGACTTCATTTCGCTGTAGTTTTCAGGAAAAACTCGAGTCTATCCAATGA
GAACAAGGTTGCACTGAAGCTGTTCAACGAAAATGGAATTGTGTTGCGAAAGACAGAGAA
AAGTTTGTCCGTGGATGAAAACGAGTTCGGGGATGTTTGGCCGACCAATTCCGAAATTCT
CCGAAGGTTAGGAGAAGGGACACTTCACTTGGAACTCACTGTCGGCGCCGATGGAAGTGA
TTCCTTCACCGGAAACGTCACCGCCAGAGTGACATGTAACCTGCTTCAAGTTGTGTTGTC
TGGCAACGGATGTGCGCAGAAGGCTAGCACGGGAGCGGCGGGATCAGCAATTGTTGTCGT
CAACCCTGATAACACCGTTTCATATAAGATGTCGCTGGTGGGTTTGTCCAGCGCTGTGAC
GTCAGTATCATTTTTGGGGGATTACCGCAAAAAGCGAACGCGCGTTATCGCCGATGTGAC
GTCACAATACGAGAACGGAAAGGCCGAAGGAAGATTAGAAACACTGAACGGTAAAGAGCT
TCACTTGCTGTTGAGCGAATTTGTTCGAGTGAGAATTGAAACCGAACAAAGCAACAGTGG
GGAGTTGGGCGGGAAAGTGACGTCATTCTTGTTCGGGGGGCATCTCGCCCGTTACAGAGG
TTTACCAACTCCACTAGCCGGTGCTCTCGTTCGCCCTCCAGTGTTCACAGGATCAGCCGG
TCACGCTTGGCTGGAGCTGAACGATCAGTGTCATCTGTATTACGAAATTGTTGTCGACGG
TTTGAGCACTCACACCGATTCAAGCGTTGCTGCTCATCTCCACGGCCTGGCCGAGATTTC
TGGAAGCGAGATTAACCACAAGCAGCTGCTGAAAGGATTTTATGGAAGCGAGGCCAGAGG
AGTTTTGCAAGTTATGAATTCGGCTCTTTACGAACAACTCGATCGTGGAACCGCATTTAT
CCAGATTGCCACGAAACGAAATCCTCAAGGAGAAATCCGAGGTCGAATTCATATTCCTAA
TCAGTGCTCTCAGGTCGGGGGAAACACCAAGGTGAATTCCCAAGACGCAATTTTGCCTGA
AAACAACCTGAAAGTTGCCTCCGTTGCGCCACCTACCGAGATCACGACACGCTTCGGTGA
CTTGCACGCAGTGGTGCATGACGGAGCTGCTCCCGAGCTCACCCAGCGGCGACTTGAAAT
GGATCCGATGTCATGTTACTCAGAAGGCCGCTGGAGGGCAGATGGGAGCCAGTGGTCGCC
TAGTTACGACCAACGCTGCACGAAATGCGTCTGTGAGGGAGGCAGTGTGGTGTGCGATCC
AATTTATTGTCCGCGCTTAACCTGCAGTAGACCGGTTGCTCTCGAAAACGAATGCTGCCC
TGTGTGTAATGATGGCTTTGGAAGCATTCCCGCCAAAGAAGAAGGATTGCCCATTGGATC
TTTATTTCAAAGCACTCTGGACTTACACAGACAAAATATTGGAGGACTTCCACAAGTGAA
AGAAGTTACTGAAGGTTGTTATGATGAAAACGACGGTAAAATGCACAGCTATGGTTCATC
TTGGACGCCATACTTCCCCATGTTCGGCCTCGTGGCTTGCCTCAACTGCACATGTCGGAT
GAGCGGAGAAATAACGTGCGGCAAGGTCACGTGTCCACCGGTCACGTGCAAAAACCCGAG
GCGGGAAAGTCGGAACCAGTGTTGCAAAACGTGCCCAGAAGAAACAACCGGTTTCAGCAC
CAGGTCACGTGACCCGCGTATGCAGGACGACAGTAGCGTGGGAATGTGCTCATTCGGGCG
TGACCTGTACGCGCGTGGTGACAAGTGGAGTGTGACGGTGCCCACTATGATTAAACGGGA
TTGCGTAGAATGCGAATGCCTCTATTCGGCCACTGGAGGTCTCAAATACAAGTGTAAATG
GAAGTGCGCGCGGAATTAAACTATAGAAACAGTATGAAGTATTTCTTATTCCGGAGCCAC
GAGGTGTTAAAATTACTTAAAGGCCCGAATTGTATGTGCTGAGTTTATTTTTATGTCGTG
TGTTTAGTAAGGTTTGCGTTTTTACTACTGCCAAATGCCTATTTATGTTTTTGTATATCG
TAGCCTATACTACAGTGCAATTGTGTTTTTAACAATAAACCACAAAAACAAATGATAACA
AGCATGTTGTTCATTTTGTGTCCATTCATTTCCAAGAAGTTGAAACACTTTCTTCTTTTA
CGACCATTCCCCCAAGATTTTGTCTTGAACTTCACCCCCTCATTTTG
| PIRSF |
Chordin (IPR016353) - T[1-959] 1.2E-263 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[40-120] 8.77 - T[717-777] 11.746 - T[818-886] 9.935 |
| SMART |
VWF_dom (IPR001007) - T[42-119] 7.1E-4 - T[719-776] 3.0E-10 - T[820-885] 8.4E-7 |
| Pfam |
VWF_dom (IPR001007) - T[42-119] 2.9E-7 - T[719-776] 2.7E-9 - T[824-885] 1.9E-7 |
| ProSiteProfiles |
CHRD (IPR010895) - T[165-282] 14.816 - T[284-404] 6.654 - T[405-525] 15.738 - T[531-655] 17.897 |
| SMART |
CHRD (IPR010895) - T[407-522] 8.4E-10 - T[533-652] 8.8E-26 |
| Pfam |
CHRD (IPR010895) - T[410-520] 4.7E-6 - T[537-650] 7.4E-16 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[740-776] . - T[847-885] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CHRD_HUMAN | 33.333 % | 461 | 2.93E-147 |
