- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S48.g01832.01.t
Possible name(s)
ALX4; VSX1; VSX2
Gene model
Location
S48 [280,253 / 282,838]
Amino acid sequence
Length: 194
>Phmamm.CG.MTP2014.S48.g01832.01.p
QTHQREGLASDRNNETSCEGLQDRNTHTSMLFTEDRKRKIDKDSDDEGSNSKKQKKRRNR
TIFTSSQLEELEKAFEKAHYPDPEAREELAKKANLQEGRIQVWFQNRRAKWRKSENSWGH
SSVMAEYGLYGAMVRHSIPLPQTVINACAKDGFKNESFAPWLIGMHRKTLESQQKLEPGE
NVPCPPHGAHEPQQ
Nucleotide sequence
Length: 734
>Phmamm.CG.MTP2014.S48.g01832.01.t
CGCAAACTCATCAACGTGAAGGTCTTGCTTCAGATCGCAATAATGAGACTTCGTGCGAAG
GGTTACAGGATCGAAACACACATACTTCCATGTTATTTACAGAAGATCGAAAACGAAAAA
TCGACAAAGATTCTGATGACGAAGGTTCCAATTCAAAAAAGCAGAAAAAGCGACGAAACA
GGACAATCTTCACCAGTTCGCAACTTGAGGAATTAGAAAAAGCATTTGAAAAAGCACATT
ATCCAGATCCAGAAGCAAGAGAAGAACTCGCAAAGAAAGCCAATTTGCAAGAAGGACGAA
TTCAGGTTTGGTTTCAAAACCGTCGTGCAAAATGGCGCAAGAGTGAAAACAGTTGGGGAC
ACAGCAGCGTAATGGCCGAGTATGGATTATACGGGGCTATGGTTCGGCATTCAATCCCTC
TACCACAGACTGTTATCAACGCCTGTGCCAAAGACGGCTTCAAAAACGAGTCCTTCGCTC
CTTGGCTGATTGGCATGCACCGAAAAACATTAGAGTCCCAACAGAAGCTCGAGCCTGGCG
AAAATGTCCCATGTCCACCACATGGCGCACATGAGCCACAACAATAAACATTCTTCATCG
TGTATGACTTATTCCATGCTGCAGAAGTTCCAATTACGGTTTATGCGCCATTAATGTTTG
TGCAATACTTTTACTTCAAATATGTTTGTGCTTACTTTAAATTAACTATCCTACTGCAGG
GACATGTGGTAAAG
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[51-116] 2.87E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[54-114] 21.702 |
| SMART |
Homeobox_dom (IPR001356) - T[56-118] 1.3E-26 |
| CDD |
Homeobox_dom (IPR001356) - T[57-115] 5.49754E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[57-113] 3.8E-24 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[89-112] . |
| ProSiteProfiles |
CVC (IPR023339) - T[116-171] 19.909 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ALX4_HUMAN | 71.642 % | 102 | 8.87E-26 |
| VSX1_HUMAN | 62.774 % | 170 | 6.15E-52 |
| VSX2_HUMAN | 72.321 % | 169 | 9.87E-52 |
