- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S487.g09316.01.t
Possible name(s)
MLH1; PMS1; PMS2
Gene model
Location
S487 [6,148 / 11,801]
Amino acid sequence
Length: 792
>Phmamm.CG.MTP2014.S487.g09316.01.p
MAEIKAINKSTVHQICSGQVVLDLATAVKELVENSLDAKATSIEIKLKEYGSEQIEVSDN
GIGVQEKNFAALTLKHYTSKLQEFVDLSSIGTFGFRGEALSSLCALCDVTISTRHKDTSI
GHKLEYDHNGKIIKKSQVARQIGTTVQLKNIFSTLPVRLNEFKRNIKKTSKGKKTVLLST
QGAPTIKQNIVTVFGSKQFELLSEFKQINPTFEVCEDYHLKEDEVNEVSDCFSVNGWLSK
IGHTHGRSSPDRQYYFINSRPVDVPRVSKLVNEVYHMFNRHQYPFVALNIEMRRDAVDVN
VTPDKRQVFLQGEKVLLAIVKSSLLQMFTSNGCHVVDSCTRPSPRLSFDVADCSKGDIEK
ESALTLTPDRATLSRNSDTEETSSPTVSLLSKFRRKDSPLPTTIIRKRPSTQGFNSPSVV
AKQPRMDRFFSPSSVQKSDLKTFGKENVTKQDTSDFETSEEDVYPLRIGNVLEIKRPQAE
VYFDSENTAHTNGEIGLPNDKQALEDREFYIFKEHTIHNDLNSNDQAKTNIVYDKAEETH
EIGRESLRTAKFSMKTISSRLKILQDMESTGSFTRSSSFQAKITPGQNTDAEKELSRNLN
KTAFFKMDVLGQFNLGFVVARYKNDLFIIDQHASDEIYNFETLQRCTEIHTQKLMIPQRL
NLTAADKLVLVENISIFQRNGFDFNITEDSGQDQVFLNRVPMSKNWDFGSADVDELIFML
SDAPGVFCRPSRIRQMFASRACRKSVMIGTALNAREMRRLLDHMAEIEHPWNCPHGRPTM
RHILDLSRIATT
Nucleotide sequence
Length: 2,379
>Phmamm.CG.MTP2014.S487.g09316.01.t
ATGGCGGAAATTAAGGCCATAAACAAATCTACAGTGCACCAAATATGCTCCGGACAAGTT
GTGTTGGATCTTGCTACTGCTGTCAAAGAACTTGTAGAAAACAGTTTGGACGCTAAAGCA
ACTAGCATTGAGATTAAATTGAAGGAGTATGGTTCTGAACAAATTGAAGTATCAGACAAT
GGAATTGGAGTGCAAGAGAAAAACTTTGCTGCACTAACATTGAAACATTACACTTCTAAA
CTGCAAGAATTTGTTGATTTAAGTTCAATCGGAACATTTGGCTTCAGAGGTGAAGCACTC
AGTTCCCTTTGTGCACTGTGTGATGTCACAATAAGCACAAGGCACAAAGATACTAGCATT
GGTCATAAACTTGAATATGATCACAATGGAAAGATAATAAAAAAGTCACAAGTGGCAAGG
CAAATTGGGACAACTGTTCAACTTAAGAATATTTTCTCCACACTGCCTGTCAGATTAAAT
GAGTTTAAGAGAAACATCAAAAAGACATCAAAGGGCAAGAAAACTGTCCTTCTTTCAACA
CAAGGTGCTCCAACTATAAAACAAAATATTGTTACTGTATTTGGATCCAAACAGTTTGAA
CTTCTTTCTGAATTCAAACAAATTAATCCCACTTTTGAGGTTTGTGAAGACTATCATCTG
AAAGAAGATGAAGTAAATGAAGTATCGGATTGTTTCAGTGTAAATGGTTGGTTATCCAAG
ATTGGCCACACACATGGTCGGTCGTCTCCAGACCGCCAATATTACTTTATCAACTCAAGG
CCTGTAGACGTGCCCCGCGTATCTAAACTTGTCAATGAAGTTTATCACATGTTTAATAGA
CATCAGTATCCGTTTGTGGCGCTCAATATTGAGATGAGGCGGGATGCGGTGGATGTGAAC
GTAACACCCGACAAACGACAGGTTTTTCTGCAAGGCGAGAAAGTTTTACTTGCAATTGTG
AAGAGTTCACTTCTGCAAATGTTCACCAGTAACGGTTGTCACGTGGTTGATTCCTGCACC
CGTCCGAGTCCACGATTGTCTTTCGATGTTGCGGATTGCAGCAAAGGTGACATTGAGAAA
GAATCAGCTTTAACTTTGACACCAGACCGAGCAACTTTATCCAGAAACAGCGATACAGAG
GAAACTTCAAGTCCAACCGTAAGCTTGCTTTCCAAGTTTCGTCGCAAAGATTCTCCACTG
CCGACGACCATCATCAGAAAGCGACCTTCCACACAGGGTTTTAACTCACCTTCGGTAGTT
GCCAAGCAACCACGTATGGACAGGTTTTTTTCACCGTCATCTGTTCAGAAATCCGACCTT
AAGACTTTTGGTAAAGAAAATGTTACTAAACAAGATACATCCGACTTTGAAACCTCTGAA
GAAGACGTTTATCCCCTACGAATTGGAAACGTATTGGAGATCAAGCGCCCGCAAGCGGAA
GTATATTTTGACTCTGAAAACACAGCGCATACAAATGGCGAAATTGGATTACCGAATGAC
AAACAGGCTCTTGAGGATCGCGAGTTTTATATTTTCAAAGAACATACAATTCACAATGAT
TTAAACTCTAATGATCAAGCGAAAACTAACATTGTTTACGACAAAGCGGAAGAAACACAC
GAAATAGGAAGGGAATCATTGCGCACGGCGAAATTTTCCATGAAAACAATAAGTTCAAGG
CTAAAGATATTACAGGACATGGAAAGTACTGGAAGTTTCACAAGGTCATCTTCCTTTCAA
GCGAAAATAACTCCGGGTCAAAACACAGACGCTGAAAAGGAACTAAGTCGAAATTTGAAC
AAAACTGCGTTTTTCAAAATGGACGTTTTAGGTCAGTTCAACCTTGGCTTTGTGGTGGCA
AGATACAAAAACGATCTCTTTATAATTGACCAGCACGCCTCGGATGAAATCTATAATTTT
GAGACCCTTCAGCGTTGCACGGAAATTCACACACAAAAATTGATGATTCCTCAACGACTA
AACTTAACTGCTGCTGACAAGTTGGTGCTCGTGGAAAACATTTCCATCTTTCAACGAAAT
GGTTTTGATTTTAATATCACTGAGGACTCGGGTCAGGATCAAGTTTTCTTGAATCGGGTT
CCAATGAGTAAGAATTGGGATTTCGGCTCAGCCGATGTTGATGAGTTGATTTTTATGTTG
AGTGACGCTCCGGGTGTTTTTTGTCGCCCCTCCAGAATTAGACAAATGTTCGCGTCAAGG
GCTTGCCGTAAATCTGTTATGATAGGCACTGCGCTTAACGCTCGTGAAATGAGGAGGTTG
CTTGATCACATGGCTGAGATTGAACACCCTTGGAATTGTCCTCATGGACGTCCTACTATG
AGACATATTCTTGATTTGTCACGGATTGCTACAACATAG
| Gene3D |
HATPase_C_sf (IPR036890) - T[1-194] 2.2E-64 |
| SUPERFAMILY |
HATPase_C_sf (IPR036890) - T[2-193] 1.01E-40 |
| TIGRFAM |
DNA_mismatch_repair_fam (IPR002099) - T[3-308] 4.3E-80 |
| CDD |
HATPase_C (IPR003594) - T[24-149] 4.42428E-8 |
| ProSitePatterns |
DNA_mismatch_repair_CS (IPR014762) - T[94-100] . |
| SUPERFAMILY |
Ribosomal_S5_D2-typ_fold (IPR020568) - T[172-329] 6.83E-33 |
| SMART |
DNA_mismatch_repair_C (IPR013507) - T[190-329] 2.2E-39 |
| Gene3D |
Ribosomal_S5_D2-typ_fold_subgr (IPR014721) - T[195-329] 3.9E-47 |
| Pfam |
DNA_mismatch_repair_C (IPR013507) - T[225-326] 7.9E-24 |
| SUPERFAMILY |
MutL_C_sf (IPR037198) - T[607-783] 1.44E-28 |
| SMART |
MutL_C (IPR014790) - T[609-752] 1.1E-33 |
| Pfam |
MutL_C (IPR014790) - T[609-752] 8.8E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PMS2_HUMAN | 55.085 % | 393 | 1.78E-124 |
| PM2P1_HUMAN | 64.242 % | 216 | 1.62E-62 |
| PM2P2_HUMAN | 61.31 % | 206 | 1.49E-60 |