- Transcript 'Moocci.CG.ELv1_2.S56...' >
- Transcript 'KH2012:KH.C7.780.v1....' >
- Transcript 'KH2012:KH.C11.299.v1...' >
- Transcript 'KH2012:KH.C11.541.v1...' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S474.g09157.03.t
Possible name(s)
GSX1; GSX2; HOXD3
Gene model
Location
S474 [116,708 / 118,884]
Amino acid sequence
Length: 349
>Phmamm.CG.MTP2014.S474.g09157.03.p
VREMQLTNSNKGSDETSVPHSFSIESLIKSDYVPSAKVKTDQIELVSPAPYEHCRSPEHL
SSISNDRRVPHHSEETNYMSPTSQRDERRIRWSPSPTVEVNGSGSDDGEPSQSNHRQTYP
SHNQPCNQQQFLPPYCQQQFNQRAAAAYATLSALGMHGGMAVNPTAPNLANLTDKISQQW
QLYQRGMDRQHLPASTQQIMYGLQYPHFYGAPSGTPSFPLAYNDFGPSVPHQDALQKRLS
PILRESSPHQGYISSDIGRSSSDLCELDAQDSADKKRMRTAFTGLQLIELEREFHSDMYL
TRLRRIRIAHHLNLSEKQVKIWFQNRRVKKKKGDKPDGQSSPFAETEQA
Nucleotide sequence
Length: 1,704
>Phmamm.CG.MTP2014.S474.g09157.03.t
GTTCGTGAAATGCAACTCACCAACAGTAACAAGGGCTCCGACGAAACTTCTGTACCGCAT
TCATTTTCAATTGAATCTCTAATAAAAAGCGACTATGTACCTTCAGCTAAAGTGAAAACG
GATCAAATTGAGCTTGTGTCACCGGCTCCTTACGAACATTGCAGAAGCCCTGAACACCTG
TCGTCCATTTCAAACGACCGTCGCGTACCGCATCACAGCGAAGAGACAAATTACATGTCG
CCAACTTCCCAACGAGACGAGCGAAGAATTCGTTGGTCACCGAGTCCAACAGTGGAAGTA
AATGGATCCGGTAGCGACGATGGGGAGCCCTCTCAATCTAACCACCGACAAACGTATCCG
AGTCATAACCAGCCTTGCAACCAGCAACAATTTCTGCCACCCTATTGTCAGCAGCAGTTT
AACCAAAGAGCCGCGGCCGCTTATGCAACTCTGTCGGCCCTTGGAATGCACGGTGGAATG
GCTGTAAACCCTACCGCTCCAAACTTGGCTAATTTAACTGATAAAATTTCTCAGCAATGG
CAGTTGTACCAACGAGGCATGGACCGTCAGCATCTACCTGCATCTACACAGCAAATCATG
TACGGTTTACAGTACCCCCACTTTTACGGAGCACCCTCGGGAACGCCCTCTTTTCCACTT
GCTTACAACGATTTTGGGCCTTCAGTGCCCCATCAGGACGCCTTGCAAAAAAGGCTTTCA
CCCATTTTGCGTGAATCTTCGCCTCATCAGGGATACATCTCATCTGATATTGGAAGAAGC
AGTTCAGATCTTTGTGAGCTGGACGCACAAGACTCGGCGGATAAGAAGCGAATGCGGACC
GCTTTTACAGGACTTCAGTTAATCGAGCTCGAACGTGAATTTCACTCAGATATGTACCTA
ACCAGATTGCGTAGAATTCGAATCGCCCACCATCTTAACTTGAGCGAAAAACAAGTAAAA
ATCTGGTTTCAGAACCGCCGAGTCAAGAAGAAGAAAGGTGATAAACCGGATGGCCAGTCA
TCTCCGTTTGCTGAAACCGAACAAGCCTAAGATTTTGTGCTGTGTCTTGACCCTTTTCAT
TTTGCTCTGCGTATTTATGCCTTCAATTGCTGCTGTCAATATACCAAGTTAAAGCGACTT
TTTTCTGTTAAATTTTGTCAGACTCTACAGTATATACACTCCGGACACAAGTATTTAAAA
AGAAGATATAGGGTTGTTTAATTGTTTTAATTGCACAAAATAGTCAAATACAGCCTACAC
GCACAGTAATTTCAACTTGCAAATCGAGAACGTTAATTTCCTGCAACAAAACACAGTAAT
CAAATTTGTATCACTATTTTGTCATCCTCTAGTATTTCCGTTGTACGAAGTTGCGAAACC
GACGTGTCCGTTTGATTTCGTAACGCGTGATACCGTTCTCTTACCACGTAGGCCGGCCAT
TTTGGTTGGCGTTCTCTGGTCATTAAACCCTTGCGATTGCCGTCTGCTCTGGTCGCAGTT
TGAGCAGTGTTGAAGTCCGCAAAATTCCAAATCATTTCACCCACAAAGTACGGCCCGGCT
CCTGTCCTTAGCTGGTCGTAAACTTTAAAATGCTGACCGATGACGTCGCACAAATATTCT
TCTGTGTACATAACTGAGGGGTTGGCATGAAAACCAGAAATTGCTCCGGCACCCCACTCC
ATGTGAATAATAGGTTTGTTAGGG
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[266-334] 9.41E-24 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[273-333] 20.601 |
| SMART |
Homeobox_dom (IPR001356) - T[275-337] 1.8E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[276-332] 8.9E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[276-327] 1.38709E-18 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[297-308] 1.6E-5 - T[312-322] 1.6E-5 - T[322-331] 1.6E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[308-331] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXD3_HUMAN | 43.269 % | 94 | 2.62E-21 |
| GSX1_HUMAN | 80 % | 101 | 4.81E-25 |
| GSX2_HUMAN | 73.529 % | 103 | 1.9E-25 |