- Transcript 'Boleac.CG.SB_v3.S739...' >
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- Transcript 'Cisavi.CG.ENS81.R16....' >
- Transcript 'Cisavi.CG.ENS81.R16....' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S474.g09157.02.t
Possible name(s)
GSX1; GSX2; HOXD3
Gene model
Location
S474 [116,687 / 118,230]
Amino acid sequence
Length: 356
>Phmamm.CG.MTP2014.S474.g09157.02.p
MLKGVIHVREMQLTNSNKGSDETSVPHSFSIESLIKSDYVPSAKVKTDQIELVSPAPYEH
CRSPEHLSSISNDRRVPHHSEETNYMSPTSQRDERRIRWSPSPTVEVNGSGSDDGEPSQS
NHRQTYPSHNQPCNQQQFLPPYCQQQFNQRAAAAYATLSALGMHGGMAVNPTAPNLANLT
DKISQQWQLYQRGMDRQHLPASTQQIMYGLQYPHFYGAPSGTPSFPLAYNDFGPSVPHQD
ALQKRLSPILRESSPHQGYISSDIGRSSSDLCELDAQDSADKKRMRTAFTGLQLIELERE
FHSDMYLTRLRRIRIAHHLNLSEKQVKIWFQNRRVKKKKGDKPDGQSSPFAETEQA
Nucleotide sequence
Length: 1,071
>Phmamm.CG.MTP2014.S474.g09157.02.t
ATGTTAAAAGGTGTAATACACGTTCGTGAAATGCAACTCACCAACAGTAACAAGGGCTCC
GACGAAACTTCTGTACCGCATTCATTTTCAATTGAATCTCTAATAAAAAGCGACTATGTA
CCTTCAGCTAAAGTGAAAACGGATCAAATTGAGCTTGTGTCACCGGCTCCTTACGAACAT
TGCAGAAGCCCTGAACACCTGTCGTCCATTTCAAACGACCGTCGCGTACCGCATCACAGC
GAAGAGACAAATTACATGTCGCCAACTTCCCAACGAGACGAGCGAAGAATTCGTTGGTCA
CCGAGTCCAACAGTGGAAGTAAATGGATCCGGTAGCGACGATGGGGAGCCCTCTCAATCT
AACCACCGACAAACGTATCCGAGTCATAACCAGCCTTGCAACCAGCAACAATTTCTGCCA
CCCTATTGTCAGCAGCAGTTTAACCAAAGAGCCGCGGCCGCTTATGCAACTCTGTCGGCC
CTTGGAATGCACGGTGGAATGGCTGTAAACCCTACCGCTCCAAACTTGGCTAATTTAACT
GATAAAATTTCTCAGCAATGGCAGTTGTACCAACGAGGCATGGACCGTCAGCATCTACCT
GCATCTACACAGCAAATCATGTACGGTTTACAGTACCCCCACTTTTACGGAGCACCCTCG
GGAACGCCCTCTTTTCCACTTGCTTACAACGATTTTGGGCCTTCAGTGCCCCATCAGGAC
GCCTTGCAAAAAAGGCTTTCACCCATTTTGCGTGAATCTTCGCCTCATCAGGGATACATC
TCATCTGATATTGGAAGAAGCAGTTCAGATCTTTGTGAGCTGGACGCACAAGACTCGGCG
GATAAGAAGCGAATGCGGACCGCTTTTACAGGACTTCAGTTAATCGAGCTCGAACGTGAA
TTTCACTCAGATATGTACCTAACCAGATTGCGTAGAATTCGAATCGCCCACCATCTTAAC
TTGAGCGAAAAACAAGTAAAAATCTGGTTTCAGAACCGCCGAGTCAAGAAGAAGAAAGGT
GATAAACCGGATGGCCAGTCATCTCCGTTTGCTGAAACCGAACAAGCCTAA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[273-341] 9.84E-24 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[280-340] 20.601 |
| SMART |
Homeobox_dom (IPR001356) - T[282-344] 1.8E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[283-339] 9.2E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[283-334] 1.12246E-18 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[304-315] 1.7E-5 - T[319-329] 1.7E-5 - T[329-338] 1.7E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[315-338] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXD3_HUMAN | 43.269 % | 94.4 | 2.47E-21 |
| GSX1_HUMAN | 80 % | 101 | 5.33E-25 |
| GSX2_HUMAN | 73.529 % | 103 | 1.81E-25 |