- Transcript 'KH2012:KH.C2.175.v1....' >
- Clone 'cien49355' >
- Transcript 'KH2012:KH.C11.210.v1...' >
- Transcript 'KH2012:KH.C6.17.v1.A...' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S46.g01770.01.t
Possible name(s)
ITGA3; ITGA6; ITGA7
Gene model
Location
S46 [286,129 / 298,094]
Amino acid sequence
Length: 885
>Phmamm.CG.MTP2014.S46.g01770.01.p
MWSWSGGMFDFELPNLLATGADLFVQSSDMYLTLGCRYRELEIERKTKCDNIPLRRDGYI
GFAVAASEAMFPGSSAVTYLAGAPRGNNTGAVTMYRKMTVAGGNTALHPLYDSVIMGDSI
GSSFGFSLAVTDLNNDGLDDLLVGAPQYYQYNNEGKYGGSVYVYINNASIGWSNIVPQRL
YGPLDSFFGYSIESLGDLDQDGFNDFAVGAPYELPSGKIYIYRGSADGIVKQAQVLNGED
YTGVSPDTKGFGVSLSSKVDIDNNLYPDLLVGTLGDHVVLFRSRPIITVRSSLDTSPLAI
NLRNPTCKYRGGAYSCFDVKFCFTYNARHDEYTEELTIEYSLSLDTDVVNEGKFSRAHFR
NPTGPSTLSGNVALPAAGTEVCPDGFQRVYFGETSKDRLRPIKVNFRFNLESDNRVIIPE
TSEQDVFQMIKDPILDADYPNTRESVVTLANTCGDDGCQSDLKVNGTLPPEVVVGDTGKI
KLMLKVTNDGEEAHQAFVTAKLPPFVFYENYTVVESSGANIECFTTDTAGTTFVTCNLGN
PYDSGSMDRIEIDLDVGSLDATTKQIIVEVTGTTTSSNPEIPPVTLISDVIINLNLDLTS
YGQPQQVRYSNSPIIGESAITYTNEIGPKLAYTFLVTNQGLNSAEGIKLHIKFPYEIKNG
KWLLYLVSTNVRSGASTVAGGCNETYVNELGYHLPLASSRDKRDVPSPAPLYEPERAASA
RTAGSYRSELKLDCTRKTAYCVPVQCTLNPIPPKSTISVIFQVRLWNNTFLEEFKKVDLV
NIVTRGRLRSSATNVRINGTTKERIQTTVDHAFFEKDVASVFPWWYILIGIILALIIYIV
IICLLIRCGFFKRKKYPRQPQQPDEFVLVDEDGNNEKNDKAETNA
Nucleotide sequence
Length: 3,225
>Phmamm.CG.MTP2014.S46.g01770.01.t
ATGGATCGAGTTTTATTTATTGCATTTATTGGATGTTTCGGACTGACAAGCAGCTACAAC
TTGGAGGGACGTCTTCCTTTGTACAAAACTGGTCCGAAAGGGGGCACGTTTGGATTTAGC
GTGGCTCTACACAAAACTTCCAGCGCCCCACAAGAAACTTTGGAGAAGAGTTTGCTTGTA
GTTGGAAGCCCGACCGCAGGTCCCTTACCAGAGCAAGGGAACACGAAAAAACCTGGTGGA
ATTTTTTACTGCCCTGTGACAACGAACCCCGAGGATTGAGAATCGGCAAAAGACGACAAT
AAGACGGGTCAGTGGCTTGGTGTCAGTCTTGAAAGTCAGGGAGCGGGACGATACTTGATC
ACCTGCGCACACCGTTATTCCCGCAGTTTCAACACAGGTCAAAACGAAATTGAGCGTCTG
TGTGGAAAGTGTTTTCTACTTAATGGTTCGCCCTGTTTAAAACTAGCTCCCTCAGTTCGA
AACGACCGCGAAGGATTACGATATTCACAGGCTGGCACCAACATCGCTTTTATCAGTGAA
ACAGAGTATATACTGGGTGGACCTGGAATGTGGTCGTGGTCGGGTGGAATGTTCGATTTC
GAATTGCCTAACCTCCTGGCCACGGGTGCCGACCTGTTTGTACAGTCATCCGACATGTAT
CTCACACTTGGATGCCGCTATCGCGAATTGGAAATCGAAAGAAAAACAAAATGCGATAAT
ATTCCACTGAGGAGAGACGGCTACATCGGATTCGCTGTAGCGGCAAGTGAGGCAATGTTT
CCCGGCTCGTCCGCAGTTACCTACTTAGCAGGGGCACCCAGGGGCAATAACACTGGAGCA
GTGACTATGTATAGAAAAATGACAGTTGCTGGTGGCAATACCGCGCTCCATCCGTTGTAC
GACAGCGTTATCATGGGGGACTCGATTGGTTCAAGTTTTGGGTTTTCGCTAGCAGTGACA
GATCTTAATAACGATGGATTGGACGATCTATTGGTTGGCGCCCCGCAATATTACCAATAT
AACAACGAAGGAAAGTATGGAGGATCCGTTTACGTTTACATCAACAACGCCAGCATAGGA
TGGAGCAACATAGTTCCCCAAAGGCTATACGGACCCCTTGACTCATTTTTCGGATACAGT
ATTGAATCGTTGGGGGATCTTGATCAGGATGGGTTCAACGACTTTGCTGTTGGTGCCCCA
TACGAACTACCAAGCGGAAAAATATACATTTACAGAGGTTCCGCTGATGGTATAGTAAAA
CAAGCGCAAGTTCTCAATGGCGAAGATTACACAGGGGTTTCCCCAGATACAAAAGGGTTT
GGTGTATCACTTTCCAGTAAGGTAGATATCGACAACAATCTATACCCGGATCTCCTTGTC
GGCACCTTAGGCGATCACGTGGTTTTGTTCAGATCGCGTCCAATCATTACAGTCCGTTCC
TCTCTTGACACAAGTCCCCTAGCAATTAACCTGCGAAATCCTACATGCAAATACAGAGGG
GGAGCGTACTCTTGTTTCGATGTAAAATTCTGCTTCACGTACAATGCGAGACACGACGAG
TACACTGAAGAATTGACCATTGAGTACTCACTGTCCCTTGACACCGACGTCGTAAATGAA
GGAAAATTTTCTCGCGCTCATTTTCGAAATCCGACGGGTCCGAGTACACTTTCTGGCAAC
GTCGCCTTACCTGCTGCAGGTACAGAAGTTTGCCCTGATGGATTTCAGCGCGTTTATTTT
GGAGAAACATCCAAGGACAGGCTTCGACCCATCAAAGTTAACTTTAGATTTAACCTGGAA
AGCGACAACCGAGTGATAATACCCGAAACCTCTGAGCAAGACGTGTTTCAAATGATAAAA
GACCCAATTCTAGATGCCGACTATCCCAATACTCGTGAAAGTGTGGTGACTCTAGCAAAC
ACTTGCGGCGACGATGGTTGCCAGAGCGACCTAAAAGTGAACGGCACACTGCCGCCAGAG
GTCGTTGTAGGTGACACTGGCAAGATTAAGCTCATGCTTAAAGTGACAAACGACGGGGAG
GAAGCCCACCAGGCATTCGTTACAGCAAAACTGCCGCCATTTGTATTTTACGAAAACTAC
ACTGTGGTTGAATCGTCGGGAGCCAACATTGAGTGCTTCACAACCGACACAGCCGGTACA
ACGTTTGTGACGTGCAATTTGGGTAACCCATACGATAGTGGAAGCATGGACAGAATCGAA
ATCGATTTGGACGTGGGTTCGTTGGACGCTACTACCAAACAGATAATCGTTGAAGTGACT
GGAACCACTACAAGTAGCAACCCTGAAATTCCACCAGTAACACTTATTTCCGACGTTATT
ATCAATTTAAATTTGGACTTGACAAGTTATGGCCAACCTCAGCAGGTTCGTTACAGTAAC
TCGCCAATTATTGGAGAATCAGCCATTACATACACCAACGAGATTGGTCCCAAACTCGCC
TACACCTTTCTTGTTACAAATCAAGGCCTTAACTCGGCTGAAGGCATTAAGTTGCATATC
AAATTCCCATACGAAATCAAAAACGGCAAATGGCTCCTCTACCTTGTGTCAACCAACGTC
CGCTCCGGTGCTTCCACTGTGGCTGGAGGTTGCAACGAGACTTACGTCAACGAGTTAGGT
TATCATCTGCCACTCGCCAGTTCAAGGGACAAGAGAGACGTCCCTTCACCTGCTCCGCTG
TATGAACCTGAAAGGGCGGCATCGGCAAGAACTGCTGGATCTTATAGAAGTGAATTGAAA
CTAGACTGTACACGAAAAACCGCGTACTGTGTCCCTGTTCAGTGCACATTAAATCCAATT
CCGCCTAAATCTACAATTTCGGTGATCTTTCAGGTTCGATTATGGAACAACACCTTTCTA
GAGGAATTTAAAAAGGTCGATTTGGTGAACATTGTAACGAGAGGACGGTTAAGATCGTCT
GCAACTAATGTGCGAATCAATGGAACGACTAAAGAACGGATTCAAACGACAGTGGACCAT
GCCTTCTTCGAGAAGGATGTGGCCTCCGTCTTCCCGTGGTGGTACATCTTGATCGGAATT
ATCTTGGCTCTCATCATCTACATTGTTATCATTTGCCTGCTTATCAGATGCGGATTTTTC
AAGAGAAAGAAGTACCCGAGACAGCCGCAACAGCCTGACGAATTTGTTCTTGTGGATGAA
GATGGTAACAACGAAAAAAATGACAAAGCTGAAACCAACGCGTGA
| Gene3D |
Integrin_alpha_N (IPR028994) - T[2-287] 4.4E-68 |
| SMART |
Int_alpha_beta-p (IPR013519) - T[56-111] 60.0 - T[120-179] 1.8E-13 - T[184-237] 2.9E-15 - T[247-302] 82.0 |
| PRINTS |
Integrin_alpha (IPR000413) - T[57-69] 3.6E-51 - T[117-137] 3.6E-51 - T[187-211] 3.6E-51 - T[251-272] 3.6E-51 - T[277-296] 3.6E-51 - T[397-410] 3.6E-51 - T[834-853] 3.6E-51 |
| ProSiteProfiles |
Int_alpha_beta-p (IPR013519) - T[110-173] 13.574 - T[174-231] 12.971 - T[237-298] 10.053 |
| Pfam |
FG-GAP (IPR013517) - T[124-164] 1.3E-12 - T[194-221] 2.2E-5 |
| Pfam |
Integrin_alpha-2 (IPR013649) - T[283-746] 5.9E-82 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[285-455] 1.31E-23 - T[455-584] 3.4E-22 - T[594-827] 6.8E-34 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITA7_HUMAN | 33.998 % | 384 | 5.73E-117 |
| ITA6_HUMAN | 32.346 % | 392 | 2.22E-120 |
| ITA3_HUMAN | 29.589 % | 289 | 1.98E-83 |