- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S469.g09087.01.t
Possible name(s)
SMTN; SMTNL1; SMTNL2
Gene model
Location
S469 [14,262 / 22,218]
Amino acid sequence
Length: 641
>Phmamm.CG.MTP2014.S469.g09087.01.p
MSEHKFDRAISLDESSLDSATQRRRNSNRISYVAKHDTIPEEGCLGNENLNRSRTCLLLR
VGSNDSVEEVSTPEDDFSFKGTQDGVILESPRIRALKSSGRFISRRGSLDSIPLQRPPPN
LRKPMARCSSADSLLDLGLRLLEDTLNEDSSSPTHSPSSLKNKIPLSRYNSSPSGHSTDT
IEEEDENPCSSPEQLTSSPDLKSSSSCPCAKISSEFSRLDSAEDNGSLPEENDFENCEYL
RRFGARQMRMRNEISSLQRDVADLEALLERVIRHTGFKVSEPAKPAEKTDTMRYSIDNLA
DITEEEVLDKMLDEADEYEERRLIRSALRELRKKKRAGGVDSSKPKTTGRYQSSVTTNGR
HTPKTDTKDSYKPSSGLHRRGGAPLGDSKVNRTTTPKSLADKYSLSSSNSTSKKDMSTGN
KKVGSIFDRGDDEVPKKSGSRLDLERRQADRRRELQRNRSMPATSTKDARKMFAKMDIAT
SGDSKVKKVGRSPTFVVPNANNVKQMLLKWCQSKTRGYEHVDINNFSGSWANGMAFCALV
HNFFPQAFEYSELDPKNRAHNFDLAFNTAQEYADADPLLDVEDMMIMGNRPDSKCVFTYV
QSLYNKLRKFEKPLKPLSPTVKVMPGIVEVDSNTLPKAVTS
Nucleotide sequence
Length: 1,926
>Phmamm.CG.MTP2014.S469.g09087.01.t
ATGTCGGAGCACAAATTTGACCGAGCAATAAGCCTTGATGAAAGCTCACTCGACAGCGCT
ACCCAGCGGCGACGCAACAGCAATCGCATCTCGTATGTTGCCAAGCATGACACCATTCCG
GAGGAAGGTTGCCTTGGCAACGAAAACCTCAACCGCTCTCGTACTTGTCTTCTGCTCCGT
GTAGGATCCAATGACTCCGTTGAAGAAGTTTCAACTCCGGAAGACGATTTCTCCTTCAAG
GGGACGCAGGATGGGGTCATCCTTGAAAGTCCGAGGATCAGAGCTCTGAAGTCTTCCGGG
AGGTTTATTTCCAGACGCGGGAGCTTGGACTCTATTCCTTTGCAGCGTCCTCCTCCAAAT
CTCAGAAAACCTATGGCAAGATGCTCCAGCGCCGATTCTTTGCTGGATCTTGGACTTCGA
CTCCTAGAGGATACTCTAAACGAGGACTCCTCTTCTCCCACACACTCGCCTAGTAGTTTA
AAGAACAAAATACCATTGTCTCGGTACAATTCGTCCCCTTCCGGACACAGCACTGATACT
ATTGAAGAAGAAGATGAAAATCCGTGCTCATCTCCAGAGCAACTAACTTCTTCTCCCGAC
TTAAAATCTTCATCCTCTTGTCCCTGCGCAAAAATTTCTTCTGAGTTTTCTAGACTGGAT
TCAGCTGAGGACAATGGCTCTTTGCCTGAGGAAAATGATTTCGAAAATTGCGAGTATCTT
CGAAGATTTGGAGCGCGCCAGATGCGCATGCGCAATGAAATATCATCGCTTCAACGTGAC
GTGGCAGACCTTGAAGCGTTGCTGGAGCGCGTGATCCGTCACACTGGTTTCAAAGTTTCC
GAACCTGCCAAGCCTGCTGAAAAAACTGATACCATGAGATACTCCATTGATAATTTAGCT
GATATCACTGAAGAGGAAGTTCTAGACAAAATGCTGGACGAAGCCGATGAATATGAGGAA
CGACGACTAATCAGATCCGCCCTTCGCGAACTTAGAAAGAAGAAAAGAGCAGGCGGAGTG
GATTCATCGAAACCGAAAACTACTGGAAGATACCAGTCCTCTGTCACCACTAACGGGCGT
CACACACCCAAAACTGACACCAAGGACTCTTACAAGCCCTCCAGTGGCCTACATAGAAGA
GGAGGGGCGCCACTTGGTGACAGCAAAGTGAACCGAACGACCACACCAAAATCGTTAGCA
GATAAGTATTCGTTGAGTTCGAGTAATTCTACTAGCAAGAAAGACATGTCTACTGGAAAT
AAAAAGGTGGGAAGCATCTTCGATCGTGGAGACGACGAAGTCCCGAAAAAATCCGGAAGC
AGACTGGACCTCGAGCGACGCCAAGCGGACAGAAGGCGCGAACTTCAACGCAACCGATCA
ATGCCAGCCACTTCCACCAAAGATGCGAGGAAAATGTTTGCCAAGATGGACATTGCCACT
TCTGGTGATTCTAAGGTGAAGAAAGTTGGACGCAGCCCAACGTTTGTCGTTCCGAACGCA
AACAACGTGAAACAGATGCTGCTGAAGTGGTGCCAGTCCAAAACACGAGGCTATGAGCAT
GTGGACATCAACAACTTCTCGGGTAGTTGGGCAAACGGCATGGCCTTCTGCGCATTAGTG
CACAACTTCTTCCCGCAAGCCTTCGAATACAGCGAACTCGACCCGAAGAACCGCGCTCAC
AATTTCGATCTGGCGTTCAACACTGCACAGGAATACGCCGACGCCGATCCGCTGTTAGAC
GTCGAGGACATGATGATAATGGGCAACAGGCCCGACAGCAAATGCGTGTTCACATACGTG
CAGTCGCTTTACAACAAGCTCCGAAAGTTCGAGAAACCTCTGAAGCCGCTTTCTCCCACC
GTCAAGGTCATGCCCGGTATCGTGGAGGTCGACTCAAACACGCTTCCCAAAGCTGTGACG
TCATAA
| Pfam |
SMTN (IPR022189) - T[295-335] 2.6E-15 |
| SUPERFAMILY |
CH_dom_sf (IPR036872) - T[493-609] 1.96E-32 |
| Gene3D |
CH_dom_sf (IPR036872) - T[499-613] 1.7E-36 |
| ProSiteProfiles |
CH-domain (IPR001715) - T[501-608] 22.297 |
| SMART |
CH-domain (IPR001715) - T[503-603] 2.2E-20 |
| Pfam |
CH-domain (IPR001715) - T[503-608] 2.8E-19 |
| CDD |
CH-domain (IPR001715) - T[504-608] 2.32647E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SMTN_HUMAN | 46.018 % | 283 | 3.99E-84 |
| SMTL2_HUMAN | 53.801 % | 203 | 1.35E-58 |
| SMTL1_HUMAN | 61.682 % | 160 | 5.71E-43 |
