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  1. Transcript 'Phmamm.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S465.g09042.01.t

Possible name(s)

PARN; PNLDC1

Gene model

Phmamm.CG.MTP2014.S465.g09042

Location

S465 [42,628 / 47,129]

Sequences

Amino acid sequence

Length: 543

>Phmamm.CG.MTP2014.S465.g09042.01.p
MDVTRDNFRQTLPLVKQAIKEASFIAIDGEFTGLSNGSFNTTAYDSPPQRYLKLHSNTHN
FLLIQFGFDFNKAFKNGIPYLRPNEEATVRATLEEKQTFRENAFRSPVKRKNNSNNSSPV
STDSPTSAADQKAKEFVETAKQKVQKFLEDANQEEELILESCNSYFRKLLFESLPLAFPD
QVLVESRTNEHTKLRHIVVVKGASSNIKKARQELTKAREEAELEDAIGFSKVISCLSESG
KLVVGHNMFLDVIYTIQQFVHPLPNDLEEFKSLVSCVFPKVLDTKLMGSMLPFKDQLQST
ALGDMHNRLKLPPFNPVGIETPGKYNIGTNDEHNHLHEAAYDAFITGSSFLSMVNFLSSF
QSTSNPIISFSSLCNLVSPYVNKAKNVKNLVKSGTVEPGLYCIQSYDDYQAEPQLWLPTS
QRNMVWRSNSTSNSVVNTPTRAKPALSFTSGLGQTSITPPTADVSTPLYRKRQGSFANRE
TTNGSLKDCDENDVEPLLKRQKSQENCTEDLPETHVKQDEAEVGEVSNVAASSGLFVVPD
QWE

Nucleotide sequence

Length: 1,632

>Phmamm.CG.MTP2014.S465.g09042.01.t
ATGGATGTTACGCGTGATAATTTTCGGCAAACTTTGCCTTTGGTAAAGCAAGCTATCAAG
GAAGCAAGTTTTATAGCAATTGATGGAGAGTTTACTGGATTATCCAATGGATCATTTAAT
ACTACAGCATATGACTCACCACCACAGAGATACCTTAAGTTGCACAGCAACACTCATAAC
TTTCTGTTAATTCAATTTGGTTTCGATTTCAACAAAGCATTTAAAAATGGAATTCCATAT
TTGCGGCCAAATGAAGAAGCGACAGTTCGGGCAACTTTGGAGGAAAAGCAAACATTTAGA
GAAAATGCATTTCGATCTCCTGTCAAACGTAAAAATAATTCAAACAATTCTAGTCCGGTT
TCCACTGACAGTCCCACATCTGCAGCAGACCAAAAAGCAAAAGAATTTGTAGAAACTGCA
AAACAAAAAGTTCAAAAATTTTTGGAAGATGCAAATCAGGAGGAAGAACTCATTTTGGAA
TCATGCAATAGTTATTTTAGAAAACTTCTGTTTGAATCTTTGCCTTTGGCTTTTCCTGAT
CAAGTTCTTGTGGAATCTCGCACTAATGAGCATACCAAATTGCGCCACATTGTAGTTGTT
AAAGGTGCCAGCTCTAACATTAAAAAGGCCCGCCAAGAGCTAACCAAAGCCAGGGAAGAA
GCTGAGCTTGAAGACGCTATTGGATTTTCAAAAGTGATATCCTGTCTAAGTGAGAGTGGA
AAGTTAGTGGTTGGGCACAATATGTTTTTGGATGTTATTTATACTATTCAGCAATTTGTT
CATCCTTTACCAAATGATCTTGAGGAGTTTAAATCCCTAGTTTCCTGTGTCTTTCCTAAA
GTGCTGGACACAAAGTTAATGGGAAGCATGTTGCCGTTTAAGGATCAGCTGCAATCCACT
GCTTTAGGAGACATGCACAATCGATTAAAACTACCTCCATTCAATCCAGTGGGAATTGAA
ACACCTGGTAAATACAACATTGGAACAAATGATGAACACAACCACCTTCATGAAGCTGCT
TATGATGCGTTTATTACAGGTTCATCATTTTTATCTATGGTTAACTTTTTGTCTTCATTC
CAATCCACTTCAAATCCCATTATCTCTTTTTCATCTTTGTGCAATTTGGTGTCCCCTTAT
GTCAACAAGGCAAAAAATGTAAAGAACTTGGTAAAATCAGGAACTGTGGAGCCAGGTTTG
TATTGCATTCAGTCCTATGATGATTACCAGGCAGAGCCACAACTTTGGCTTCCCACAAGC
CAAAGAAACATGGTTTGGCGGTCCAATTCAACGTCAAATAGTGTGGTCAATACACCTACT
AGAGCAAAACCAGCCTTATCTTTTACCAGTGGACTTGGTCAAACCAGTATTACCCCTCCA
ACTGCAGACGTTTCTACTCCGTTATATCGGAAACGACAGGGCAGTTTTGCAAATCGTGAA
ACGACAAACGGTAGTTTAAAGGACTGCGATGAAAATGATGTGGAGCCACTTTTAAAACGA
CAAAAATCGCAGGAGAATTGTACAGAAGATTTGCCAGAAACCCATGTGAAACAAGACGAG
GCGGAAGTTGGCGAGGTATCGAACGTTGCAGCAAGTTCTGGCTTGTTTGTCGTACCGGAT
CAGTGGGAGTAA

InterProScan

SUPERFAMILY
RNaseH-like_sf (IPR012337) - T[1-360] 1.7E-45
Gene3D
RNaseH_sf (IPR036397) - T[1-116] 3.9E-21 - T[144-393] 1.9E-52
Pfam
RNase_CAF1 (IPR006941) - T[67-350] 9.9E-47
SUPERFAMILY
R3H_dom_sf (IPR036867) - T[131-210] 2.35E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PARN_HUMAN 37.615 % 280 7.84E-87
PNDC1_HUMAN 27.536 % 94.4 1.87E-20