Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S464.g09030.01.t

Possible name(s)

ARMC6

Gene model

Phmamm.CG.MTP2014.S464.g09030

Location

S464 [76,099 / 89,232]

Sequences

Amino acid sequence

Length: 385

>Phmamm.CG.MTP2014.S464.g09030.01.p
YLEQLLTVLSKHFQKDLSFRYQASKLASADRIIIKTCQICKENPQHLLSCLETFSCLLDG
QPDLIQNQEIVFLLELLAETHSAEIQAVALKNLKLCCTKHEGNRVHFVKQGGIEKSLKTA
EQHQEVKNVIKEVCGVLRCLALDDDVRVQFGKAHEHIKKVVNDHKGIERLFELLKVHEED
AVLAKELCLTLSNLMVRNEFCQQFVDLGGLEVINRIFNFHLEKQVVIKSCITLLKAISGN
DEVKVAVVKAGIVDYLLKALDEHASNAQICEACFAALTTLTLRNPSHCDVIMSKRAAPLM
TQAMRNHQDRPGVQKQACMAIRNLVARTRHHTTAFIENGAENLIRQASENYKSVLEDEAK
AALRDLDVKVDLKERWKGKNAGVTY

Nucleotide sequence

Length: 1,235

>Phmamm.CG.MTP2014.S464.g09030.01.t
TATCTGGAGCAGCTCCTTACTGTTCTGTCAAAGCACTTTCAAAAAGACCTGTCGTTTCGA
TACCAAGCTTCCAAACTGGCTAGTGCTGACAGAATTATAATTAAAACATGCCAAATATGT
AAGGAAAATCCTCAACATTTGCTTTCATGTTTAGAAACGTTTTCCTGCCTTTTGGATGGC
CAACCTGATTTAATTCAAAACCAGGAAATTGTTTTTCTGTTAGAATTGCTTGCAGAGACA
CACTCTGCGGAAATCCAGGCTGTTGCCTTAAAAAATCTAAAACTTTGCTGCACCAAACAT
GAAGGAAACAGGGTACATTTTGTTAAACAGGGTGGGATCGAAAAATCACTAAAAACTGCA
GAGCAACATCAGGAAGTGAAAAATGTGATCAAGGAAGTTTGTGGGGTTTTGCGATGCCTT
GCACTTGATGATGATGTTCGTGTGCAGTTTGGTAAGGCCCATGAACACATAAAGAAGGTT
GTAAATGACCACAAGGGAATAGAGAGGCTGTTTGAATTACTGAAAGTGCATGAGGAAGAT
GCTGTATTGGCAAAAGAGCTTTGTCTGACCCTCAGTAATCTCATGGTACGAAATGAGTTT
TGTCAGCAGTTTGTTGACCTTGGTGGTTTAGAGGTCATCAATAGAATATTCAACTTTCAT
TTGGAGAAACAAGTCGTCATTAAATCGTGCATCACTTTACTAAAAGCAATCAGTGGAAAC
GACGAAGTTAAGGTCGCAGTCGTAAAAGCAGGCATTGTTGACTATTTGCTGAAAGCATTA
GACGAACATGCTTCAAACGCACAGATATGTGAAGCATGTTTTGCAGCTCTTACCACCCTC
ACGCTACGTAACCCATCTCACTGTGACGTCATAATGTCGAAGCGCGCCGCCCCGTTGATG
ACGCAAGCAATGCGTAATCATCAAGATCGACCTGGTGTTCAGAAACAAGCTTGCATGGCG
ATCAGGAATTTAGTCGCAAGGACACGTCATCACACAACTGCGTTTATTGAAAACGGTGCA
GAAAATCTTATTCGCCAAGCCAGCGAAAACTACAAAAGTGTGCTCGAGGACGAAGCAAAA
GCTGCTTTGCGTGACCTCGATGTTAAAGTTGATCTGAAGGAAAGATGGAAGGGAAAAAAC
GCTGGTGTTACCTATTGATCAAGTTTTAACGTTGTATAAGATAATATACCTTGTGTGTTG
TTTTGTCCTTCAAATATTTGTTTATATTGCAGGAA

InterProScan

Gene3D	ARM-like (IPR011989) - T[33-151] 1.3E-6 - T[152-370] 4.3E-26
SUPERFAMILY	ARM-type_fold (IPR016024) - T[41-376] 1.73E-31
SMART	Armadillo (IPR000225) - T[99-142] 34.0 - T[154-196] 6.1 - T[197-239] 190.0 - T[240-282] 0.24 - T[284-326] 5.9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ARMC6_HUMAN	37.565 %	243	9.86E-76