- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S455.g08930.01.t
Possible name(s)
CPSF2; CPSF3; INTS11
Gene model
Location
S455 [8,979 / 12,318]
Amino acid sequence
Length: 548
>Phmamm.CG.MTP2014.S455.g08930.01.p
MKVGSDSVLYTGDYNMTPDRHLGAAWVDKCRPSLLITESTYATTIRDSKRAYIENPGPMV
VFATPGMLHGGLSLEIFKKWCTNEKNMIIMPGYCVAGTVGNKILSGMRKIELKPGQVVEI
KMQVQYMSFSAHADAKGIMQLIRMCEPENVMLVHGEAVKMEFLASKINKTRGSQPFYDLV
PLGRSVAARNFSYLFIXNARVAIRRALRKCQLCRRRDANPGSQQMADLPSARLQLNEAPF
THTGVDYFGPFTIKIRRSEVKRYGCLFTCMTSRAIHLEVSPDLSTDAFINAMRRFIARRG
PIKHMYSDNGTNFVGAERVLRESVDEWNQQQIHNYLRQKAVTWHFNPPSASHFGGAWERM
VRSVRRILMTLLPDKPLDDDLLHTLFLEVEDIVNSRPLTQVQLEVGEELPLTPNHLLKLK
PTVGLPPVNTSKTDCYARRRFRAVQYLADEFWRRWMQEYPRTVIARQKWHERKKNFAVND
IVLLVDDSTPRGRWPMGRVLNIFHDKNGIVRSVEVKTSSGVLKRPVAKLCVIVPAETGGD
EEETEPRM
Nucleotide sequence
Length: 1,647
>Phmamm.CG.MTP2014.S455.g08930.01.t
ATGAAGGTCGGCAGTGACTCTGTCCTGTACACTGGAGATTACAACATGACCCCTGACAGG
CATTTGGGGGCTGCATGGGTGGACAAATGCAGACCAAGCTTGTTAATTACTGAATCCACT
TATGCCACAACCATAAGGGACTCCAAAAGAGCCTATATTGAAAACCCTGGTCCCATGGTG
GTTTTTGCTACACCTGGAATGCTGCATGGAGGATTGTCTTTGGAGATCTTTAAAAAGTGG
TGCACTAATGAGAAAAACATGATCATTATGCCTGGCTATTGTGTTGCAGGTACAGTCGGC
AATAAAATTTTGTCTGGAATGAGAAAAATAGAGCTGAAACCAGGACAGGTGGTAGAAATC
AAAATGCAAGTGCAGTACATGTCATTTAGTGCACATGCCGATGCTAAAGGAATAATGCAG
CTAATTAGAATGTGCGAACCAGAAAATGTTATGCTTGTGCATGGAGAAGCAGTGAAAATG
GAATTCCTTGCCTCAAAAATAAACAAGACCAGGGGTTCCCAACCTTTTTACGATCTCGTA
CCACTTGGACGCTCTGTAGCAGCAAGAAATTTTTCTTACCTTTTCATTNTTAACGCGCGA
GTTGCAATCCGTCGTGCCTTGCGAAAATGTCAACTTTGCCGACGACGTGATGCCAACCCA
GGATCGCAGCAAATGGCCGATCTGCCGTCGGCCAGACTACAATTAAATGAGGCCCCTTTC
ACCCACACTGGGGTGGACTACTTTGGACCTTTCACAATTAAGATACGCCGAAGTGAAGTG
AAACGCTATGGGTGCCTTTTTACGTGTATGACCAGTCGCGCCATCCACCTGGAAGTTTCC
CCCGACCTTTCGACAGATGCTTTCATTAACGCTATGCGACGCTTCATTGCACGTCGCGGA
CCAATCAAGCACATGTATTCAGATAACGGGACAAACTTTGTCGGAGCGGAACGAGTTCTC
CGAGAGTCCGTCGATGAATGGAACCAACAGCAAATACACAACTACTTAAGACAAAAGGCG
GTAACTTGGCACTTTAATCCTCCTAGTGCCAGTCATTTTGGAGGTGCTTGGGAAAGGATG
GTCAGATCTGTCCGCCGCATATTGATGACGCTGCTTCCAGACAAACCACTCGACGACGAT
TTGCTACACACTTTATTCCTTGAGGTTGAAGATATTGTGAACTCGAGGCCCCTGACTCAA
GTTCAATTAGAAGTAGGAGAGGAATTACCACTTACTCCTAACCATTTGCTGAAGCTAAAG
CCAACGGTCGGTTTGCCGCCAGTGAATACTTCGAAGACCGACTGCTACGCGAGACGCCGG
TTTCGTGCTGTTCAGTACCTTGCTGACGAGTTCTGGCGTCGTTGGATGCAAGAATACCCT
CGGACGGTCATCGCCAGACAGAAGTGGCATGAACGTAAGAAGAATTTTGCCGTTAACGAC
ATTGTGCTGTTGGTAGACGATTCGACCCCGAGGGGGCGCTGGCCTATGGGCCGAGTTCTT
AACATATTCCACGACAAAAACGGAATTGTCCGAAGCGTTGAAGTAAAGACTTCCAGCGGA
GTTCTGAAGAGACCTGTTGCAAAGCTGTGCGTTATCGTTCCTGCCGAGACTGGGGGCGAC
GAAGAAGAAACAGAGCCAAGGATGTAG
| SUPERFAMILY |
RibonucZ/Hydroxyglut_hydro (IPR036866) - T[2-171] 1.17E-50 |
| Gene3D |
RibonucZ/Hydroxyglut_hydro (IPR036866) - T[4-46] 2.0E-5 - T[134-164] 1.9E-29 |
| SMART |
Beta_Casp (IPR022712) - T[8-103] 2.9E-5 |
| Pfam |
Beta_Casp (IPR022712) - T[47-103] 3.4E-16 |
| Pfam |
RMMBL (IPR011108) - T[118-173] 3.9E-16 |
| Gene3D |
RNaseH_sf (IPR036397) - T[229-404] 4.3E-12 |
| ProSiteProfiles |
Integrase_cat-core (IPR001584) - T[235-421] 11.746 |
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[236-399] 1.05E-19 |
| Pfam |
Integrase_cat-core (IPR001584) - T[239-366] 8.2E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| INT11_HUMAN | 71.2 % | 193 | 2.23E-54 |
| CPSF3_HUMAN | 39.583 % | 110 | 2.29E-25 |
