- Clone 'ma309k10' >
- Transcript 'KH2012:KH.C10.27.v3....' >
- Transcript 'KH2012:KH.C2.265.v1....' >
- Clone 'AJ494488' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S40.g01557.01.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
S40 [199,730 / 214,161]
Amino acid sequence
Length: 937
>Phmamm.CG.MTP2014.S40.g01557.01.p
MPLRLDIKRKLNARSDRVKCVDLHPTEPWMLVSLYNGNVHIWNHESQTLVKSFEVCDLPV
RATRFVPRKNWVITGSDDMQIRVFNYNTLERTHAFEAHTDYVRSIAVHPTQPYILTSSDD
MLIKLWDWEKKWNCAQVFEGHTHYVMQIVINPKDNNQFASASLDHSIKVWQLGSSTPNFT
LEGHDKGVNCVDYYNGGDKPYLISGADDRLTKIWDYQNKTCVQTLDGHTQNVVCVSFHPE
LPIILTGSEDGTVKIWHANTYRLETTLNYGMERVWCCTALKGSNNIALGYDEGSIMIKLG
REEPAMSMDANGKIIWAKHSEIQQANLKALTDMDVKDGERLQLQVKDMGSCEVYPQNLNH
NANGRFVVVCGDGEYIIYTAMALRNKAFGSALEFTWANDSTEYAVRESNSTVKLFKNFKE
RKSFKPDFGAEGIYGGHFLGVRTSQGLAFYDWESLDLIRRIEINPKNVFWSDNGDLVCIT
TEESFYILKFNQSKLEESKENPDLVTEDGVTDVFSEDIGEIEEIVRTGLWVGDCFIYTNS
VNRLNYYVGGEIVTIAHLDRTLYLLGYIPNDNRLYLGDKELNVVSYSLLLSVLEYQTAVM
RQDFETADKVLPSIPKEQRTRVAHFLEKQGFKPQAMAVTSDPEHKFELALNLGDLKIAYD
LAKEAQAEQKWKQLAELATSKCEFGLAQECLRQAQDFGGLLLLATAAGNSNMVKSLAENA
ETGGKNNVAFLSYFITGQTQKCLDLLISSNRLPEAAFFARTYLPSEVSRVVQLWKEGLSK
SNKKAGDALADPSQYENLFPGMADSLVAQQYLAATEKQRPAAHYPLTPSNDDRDILAESE
GFEGTSQDVPVKENEIVPEVSIPLIKPDKANPEPEEKEETPPVEQVPAKCDVTEQETKVS
SQTLDDFDDLELDIENLELDDDIDTSDVNLDDEFLED
Nucleotide sequence
Length: 2,814
>Phmamm.CG.MTP2014.S40.g01557.01.t
ATGCCGCTCAGATTGGACATCAAGCGTAAACTTAATGCACGCTCAGATCGAGTAAAGTGT
GTTGATCTGCATCCAACTGAACCATGGATGCTTGTTTCTTTGTACAATGGCAATGTTCAT
ATTTGGAATCATGAGTCACAAACATTGGTCAAATCATTTGAAGTGTGTGACCTGCCAGTC
CGAGCTACAAGATTTGTCCCAAGAAAGAACTGGGTTATTACTGGATCGGACGACATGCAA
ATTCGTGTTTTCAATTACAACACACTGGAACGGACCCATGCCTTCGAAGCTCACACTGAC
TATGTGCGATCAATTGCTGTTCATCCAACTCAACCTTACATACTGACATCAAGTGATGAC
ATGTTGATCAAGCTTTGGGACTGGGAGAAGAAATGGAATTGTGCTCAGGTGTTCGAGGGC
CACACTCACTATGTTATGCAGATTGTAATTAATCCAAAGGATAACAACCAGTTTGCCAGC
GCCTCACTCGATCACAGCATTAAAGTTTGGCAACTTGGCTCTTCTACTCCCAATTTTACA
CTGGAAGGCCATGACAAAGGGGTGAACTGTGTTGATTATTACAATGGTGGAGACAAACCT
TATCTCATTTCTGGAGCTGATGATCGTCTCACCAAGATTTGGGATTATCAAAACAAGACT
TGTGTGCAAACGTTGGACGGTCACACCCAAAATGTTGTGTGTGTCAGTTTTCATCCTGAA
CTTCCCATCATTCTAACTGGATCTGAAGATGGCACAGTAAAGATTTGGCATGCAAACACA
TACAGGCTCGAGACCACCCTGAACTATGGGATGGAAAGAGTGTGGTGTTGTACTGCATTG
AAAGGATCCAACAACATTGCACTTGGATATGATGAGGGAAGTATAATGATCAAACTTGGC
CGGGAAGAGCCAGCAATGTCCATGGATGCCAATGGCAAAATTATTTGGGCAAAACATTCG
GAAATACAACAGGCTAATCTGAAGGCACTTACAGATATGGATGTAAAGGATGGTGAAAGG
TTGCAACTTCAAGTTAAAGATATGGGCAGTTGTGAAGTTTATCCACAAAACCTGAACCAC
AATGCTAACGGAAGATTTGTTGTTGTGTGTGGAGACGGAGAATACATCATTTACACTGCG
ATGGCATTGAGAAACAAAGCATTCGGATCAGCCTTGGAATTTACCTGGGCAAATGATTCA
ACGGAGTACGCTGTTCGAGAGAGCAATTCTACTGTGAAGTTGTTTAAGAATTTCAAGGAA
AGAAAATCTTTCAAGCCTGACTTTGGAGCTGAGGGAATTTATGGAGGCCACTTTCTTGGT
GTTCGTACCTCGCAAGGACTGGCATTCTATGACTGGGAAAGCTTGGATTTGATCCGAAGA
ATTGAAATTAACCCCAAAAATGTTTTTTGGTCTGACAATGGAGACCTGGTTTGCATCACA
ACCGAAGAGTCATTTTACATTCTCAAGTTCAACCAAAGCAAACTGGAGGAGTCGAAGGAG
AATCCTGATCTAGTTACTGAGGACGGAGTGACTGATGTTTTCAGCGAGGACATTGGTGAA
ATTGAAGAAATAGTTCGAACTGGCCTCTGGGTGGGAGACTGCTTCATTTATACAAACTCG
GTAAACAGGCTCAACTACTATGTTGGTGGTGAAATTGTCACCATTGCACATCTCGACAGA
ACATTGTATCTGCTCGGATATATTCCAAACGACAATCGCTTGTATCTTGGTGACAAAGAA
CTGAATGTGGTGAGTTACTCTCTTCTGCTATCTGTACTTGAATACCAAACTGCTGTCATG
CGTCAAGATTTCGAGACAGCTGATAAAGTATTGCCATCGATTCCCAAAGAGCAGAGAACA
AGAGTTGCACACTTCCTTGAAAAACAGGGCTTCAAACCTCAAGCTATGGCTGTTACCAGC
GACCCTGAACATAAGTTTGAGCTTGCTCTTAATCTGGGTGACCTTAAAATTGCCTATGAC
CTTGCCAAAGAAGCACAGGCTGAACAGAAATGGAAGCAACTCGCCGAGCTCGCCACAAGC
AAATGTGAGTTTGGATTGGCCCAGGAATGTTTGAGACAAGCTCAAGACTTCGGTGGTCTC
CTGCTTCTTGCCACTGCAGCAGGCAACAGCAATATGGTCAAATCCCTTGCTGAGAATGCT
GAAACCGGAGGCAAGAACAACGTTGCTTTCCTGAGTTATTTCATCACTGGACAAACCCAG
AAATGTCTCGATCTTCTCATCAGCTCAAATCGACTGCCTGAAGCTGCATTTTTCGCTCGA
ACTTATTTGCCCAGTGAAGTGTCCAGAGTTGTCCAGCTTTGGAAAGAAGGTTTATCAAAG
AGCAACAAAAAAGCTGGTGATGCATTGGCTGATCCTTCCCAGTATGAAAATCTATTTCCT
GGCATGGCTGACAGTCTTGTTGCACAACAATACTTGGCTGCTACTGAAAAACAAAGACCA
GCAGCACATTACCCTCTTACACCGAGTAACGATGATCGAGATATTTTAGCCGAGTCTGAA
GGTTTTGAAGGAACTTCACAAGATGTGCCGGTTAAGGAAAACGAAATTGTTCCTGAAGTG
TCGATTCCGCTTATAAAACCAGATAAAGCGAACCCTGAGCCAGAAGAGAAGGAAGAAACC
CCGCCAGTGGAGCAAGTTCCCGCCAAATGCGATGTCACCGAACAAGAGACGAAGGTGTCG
TCACAAACCTTGGATGATTTTGACGATCTTGAGTTGGACATAGAAAATCTCGAACTGGAT
GACGACATCGACACCTCTGACGTCAACCTCGATGACGAGTTCCTTGAGGATTGA
| PIRSF |
COPB2 (IPR016453) - T[2-902] 0.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[3-297] 9.16E-81 |
| SMART |
WD40_repeat (IPR001680) - T[4-43] 0.1 - T[46-85] 0.011 - T[88-127] 1.3E-8 - T[131-171] 1.4E-7 - T[174-215] 2.5E-6 - T[218-257] 2.3E-11 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[11-300] 6.5E-109 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[11-266] 50.99 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[11-52] 8.704 - T[95-127] 13.717 - T[138-180] 11.979 - T[181-224] 12.079 - T[225-266] 16.39 |
| Pfam |
WD40_repeat (IPR001680) - T[60-85] 0.23 - T[92-127] 2.6E-5 - T[132-170] 0.0099 - T[177-215] 4.4E-5 - T[220-256] 6.2E-9 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[114-128] 4.7E-5 - T[158-172] 4.7E-5 - T[244-258] 4.7E-5 |
| SUPERFAMILY |
Haem_d1_sf (IPR011048) - T[198-510] 3.66E-17 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[319-763] 3.4E-168 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 26.702 % | 255 | 1.0E-70 |
| COPB2_HUMAN | 72.068 % | 1445 | 0 |
| LIS1_HUMAN | 25.448 % | 114 | 7.13E-27 |