Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S3.g00124.01.t

Possible name(s)

EIF2A; EIF3B

Gene model

Phmamm.CG.MTP2014.S3.g00124

Location

S3 [33,948 / 38,147]

Sequences

Amino acid sequence

Length: 418

>Phmamm.CG.MTP2014.S3.g00124.01.p
MHIDKLESFKVSPNSQPPHRVACFIRGAKGAPSSVRVFEHPKFSADDVVANKSFFKADSV
DILWNNRGTELLVKTTVDVDTTGESYYGEQSLHYMSASGETAIVSLSKKGPIYDAKWSPN
SNQFCVVFGFMPAKACIFNRKCNMIFEFSPTPKNECFYNPQGNLLVLAGFGNLRGNIEIW
DCDRKKQVSQYTSPDATLFEWCSDGVHFLTATTAPRLRVSNGYKLWHYLDGILYEESVST
ELHQVLWQPKPEGTYPVPVIKDVSKSDLMSKVKADTPTAYVPPHARGKTEYTAAKERFVK
DDDAPVTPENHSKAAQKNKKKRENKKKAGAPPPNLTNEQQDVVQMAKYLLTDSSIPQPTN
ESTNPNDKKIKNLKKKLQAIEKLKQQQAQGKELEKNQVEKLKTEDSLLQELSQLQLKS

Nucleotide sequence

Length: 1,257

>Phmamm.CG.MTP2014.S3.g00124.01.t
ATGCACATAGACAAGTTAGAGTCATTCAAAGTTTCTCCTAACTCCCAACCCCCACACAGA
GTTGCTTGCTTTATAAGAGGTGCCAAAGGTGCGCCCTCATCTGTAAGGGTTTTTGAACAT
CCAAAGTTTTCAGCAGATGATGTCGTCGCAAACAAAAGCTTTTTCAAAGCTGATAGTGTT
GATATTCTATGGAACAATAGGGGCACAGAGTTGCTTGTTAAAACAACAGTAGATGTTGAC
ACAACTGGTGAATCTTACTATGGGGAACAATCTCTTCATTACATGTCAGCGTCTGGTGAA
ACTGCAATAGTCAGTCTGTCGAAAAAAGGTCCAATCTATGATGCTAAATGGTCCCCGAAT
TCGAATCAGTTTTGTGTTGTGTTTGGTTTTATGCCAGCTAAAGCATGCATATTTAATAGA
AAATGCAACATGATTTTTGAGTTCAGCCCTACTCCTAAGAATGAATGTTTCTACAATCCG
CAGGGAAATCTTCTGGTTTTAGCCGGCTTTGGAAATCTTCGAGGCAATATTGAAATCTGG
GACTGTGATCGAAAAAAACAAGTTTCTCAATATACTTCACCTGACGCAACACTTTTTGAG
TGGTGTAGTGACGGAGTTCATTTTTTGACTGCCACTACTGCCCCGAGACTAAGAGTTAGC
AACGGTTACAAACTCTGGCACTATTTAGATGGAATACTGTATGAAGAGAGCGTGAGTACG
GAACTACATCAGGTTTTGTGGCAACCGAAACCAGAAGGCACCTATCCCGTTCCTGTTATC
AAAGATGTTTCTAAAAGTGACCTTATGAGCAAGGTCAAAGCTGATACACCAACTGCATAT
GTTCCACCGCATGCCAGAGGGAAAACTGAATACACAGCTGCTAAGGAACGTTTCGTAAAA
GATGATGACGCACCTGTTACGCCGGAAAACCATTCAAAAGCTGCACAGAAAAATAAAAAG
AAACGAGAAAATAAGAAAAAGGCGGGTGCCCCACCTCCCAATCTCACTAATGAACAACAG
GACGTTGTACAAATGGCAAAGTATCTTTTGACTGATTCGTCCATACCACAGCCTACAAAT
GAATCAACAAATCCCAATGATAAGAAAATAAAAAATTTAAAGAAGAAACTTCAAGCGATC
GAGAAGTTGAAGCAGCAGCAAGCACAAGGAAAAGAATTAGAAAAAAATCAAGTCGAAAAA
CTTAAAACCGAAGACTCTTTGCTGCAAGAACTTAGCCAATTACAGTTGAAGAGTTAA

InterProScan

PANTHER	TIF2A (IPR011387) - T[2-415] 7.3E-130
Pfam	TIF_beta_prop-like (IPR013979) - T[52-245] 3.2E-70
Gene3D	WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[56-253] 3.6E-6
SUPERFAMILY	WD40_repeat_dom_sf (IPR036322) - T[94-222] 3.48E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EIF2A_HUMAN	45.794 %	337	8.83E-111