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TRANSCRIPT CARD

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  1. Molecular Tool 'FGF9/16/20-MO (Lemaire lab)'
  2. Transcript 'Moocul.CG.ELv1_2.S94...'
  3. Transcript 'KH2012:KH.C8.316.v1....'
  4. Transcript 'Haaura.CG.MTP2014.S2...'
  5. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S393.g08237.01.t

Possible name(s)

NECTIN1; NECTIN3; PVR

Location

S393 [127,949 / 133,598]

Sequences

Amino acid sequence

Length: 562

>Phmamm.CG.MTP2014.S393.g08237.01.p
MGRDTSMPCYDPTMASGYESLFVDVVFTPPPTSPPKQPFSVCQYQPGNQALGTVHGSYQG
RVGFTSVGALTLSSVSLTDEGVYTCRPNAFGLVPSSVETNLTVYVTPTVEVRKIEDPLLS
GSGELQAAACTASNGKPPASVEWTTDRNLQFNESTSNIATSSQAQGETVEKVLHIRPTKF
YNGKSFFCVVKHPAFEESVNRVVVLNVTYPPEKAVVIVNNDRDGLTCESEGNPPPTITWL
MPPIAPTSTFRGKTVMLISPQDPSRSNDSYTCVASNGISPNQRTTVTTAFAVTYVEMTQQ
SNVGAIVGGVIGGLALLAIIVLLVYVFLLKPSREKDTGPYQYSGTSMIYKENSGGPRPTI
EHANESLNRNRPPSPSGPPPEDKMDRSDTSSESDSDEGNHDVDVEVNPATNLVDPDRQDN
AEIGGIVSRASNRRKRPSTSPAHRQSRSENNMPRKEESPVPNPRQNVRYDTPPENDYDDD
DQLIQDERYQGYPSEEYDDRYQPQYVGYPAGRQPPRRMDSLPQHEPKYTEIDHTGYQGGH
RRPQFEEPVEYAQIRHGYSHVV

Nucleotide sequence

Length: 1,689

>Phmamm.CG.MTP2014.S393.g08237.01.t
ATGGGGAGAGACACTTCTATGCCATGTTATGATCCAACTATGGCCAGTGGATATGAGAGC
TTGTTTGTTGATGTGGTGTTTACTCCTCCTCCTACTTCTCCACCTAAACAACCTTTTTCT
GTTTGTCAGTATCAGCCTGGTAACCAAGCTTTAGGGACTGTCCATGGCAGCTATCAGGGA
AGAGTTGGATTTACATCTGTCGGTGCTTTAACCTTAAGTAGTGTAAGTTTGACAGACGAG
GGTGTCTATACTTGCAGGCCTAATGCATTTGGTTTGGTGCCATCTTCTGTTGAAACAAAT
CTAACTGTGTATGTTACACCGACTGTGGAAGTTAGAAAAATAGAAGACCCACTTCTATCT
GGCTCTGGGGAACTTCAAGCTGCAGCTTGTACAGCCTCAAATGGAAAACCTCCTGCCAGT
GTTGAATGGACTACAGACAGAAACTTGCAGTTTAATGAATCAACATCAAATATTGCTACC
TCAAGTCAAGCACAAGGGGAGACTGTTGAGAAGGTGCTCCATATTCGTCCGACAAAGTTT
TACAATGGAAAATCTTTCTTTTGTGTTGTAAAGCACCCTGCTTTTGAGGAAAGCGTCAAT
AGAGTAGTTGTTTTAAATGTGACATATCCTCCAGAAAAGGCTGTTGTTATTGTTAACAAT
GACAGAGATGGTCTTACATGTGAATCAGAAGGTAACCCACCACCAACTATAACATGGTTG
ATGCCACCGATTGCCCCAACCTCAACGTTTCGTGGAAAAACAGTGATGTTGATTTCGCCA
CAAGATCCTTCGCGAAGCAATGATTCCTACACATGTGTTGCAAGCAATGGGATTAGTCCA
AACCAAAGAACAACTGTTACAACTGCTTTTGCTGTAACCTACGTGGAAATGACTCAACAA
AGCAATGTGGGTGCAATTGTTGGAGGTGTAATTGGAGGTTTGGCACTCCTTGCTATAATT
GTGCTGCTAGTGTATGTATTTTTGTTGAAACCTTCAAGAGAAAAAGACACTGGTCCTTAC
CAATATTCTGGCACCTCAATGATTTACAAGGAGAACAGTGGTGGTCCACGTCCAACTATT
GAGCATGCCAATGAAAGCCTAAACAGAAACCGACCTCCAAGTCCATCGGGACCTCCTCCA
GAAGATAAGATGGATCGCAGCGATACATCCAGTGAATCAGACTCAGATGAAGGAAATCAT
GATGTTGATGTAGAAGTGAACCCAGCAACAAACCTGGTTGACCCTGACAGACAGGACAAT
GCTGAAATTGGTGGCATTGTCAGTCGCGCCTCAAATCGCAGAAAACGTCCCAGCACTTCC
CCAGCTCACCGACAAAGCCGCAGTGAAAACAATATGCCAAGGAAGGAGGAATCACCTGTA
CCTAATCCAAGGCAGAATGTGAGATATGACACGCCACCAGAAAATGACTATGATGATGAT
GATCAACTGATTCAGGATGAACGATACCAGGGTTACCCCAGTGAGGAATATGATGATCGA
TACCAACCACAATATGTTGGATACCCAGCTGGTCGGCAGCCACCGAGGCGTATGGACAGC
CTTCCACAGCACGAGCCTAAGTACACAGAAATCGATCATACTGGTTACCAAGGAGGACAC
AGAAGGCCGCAATTTGAAGAACCAGTGGAGTATGCTCAAATTCGACATGGGTATTCCCAT
GTGGTGTAA

InterProScan

Gene3D
Ig-like_fold (IPR013783) - T[2-115] 2.3E-9 - T[117-213] 5.7E-18 - T[214-296] 1.3E-7
SUPERFAMILY
Ig-like_dom_sf (IPR036179) - T[36-109] 1.96E-8 - T[129-211] 2.66E-10 - T[203-282] 9.18E-8
ProSiteProfiles
Ig-like_dom (IPR007110) - T[107-200] 9.627 - T[210-287] 9.01
Pfam
CD80_C2-set (IPR013162) - T[117-198] 2.9E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NECT3_HUMAN 35.751 % 112 3.41E-26
PVR_HUMAN 28.72 % 82.4 9.43E-17