Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S38.g01501.01.t

Possible name(s)

THNSL1; THNSL2

Gene model

Phmamm.CG.MTP2014.S38.g01501

Location

S38 [278,030 / 283,563]

Sequences

Amino acid sequence

Length: 444

>Phmamm.CG.MTP2014.S38.g01501.01.p
MKFRSTRGSDQLITFEETLLSAYGKDGGMWMAERVPEISLETLKDWKHLSYIEVVQKVVA
LHVSEDEIPYKEQEELLNRAYQKFNIKEVVKMAALTKQVQVMELFHGESMAFKDLAMCCV
SEFLQYFLEKRKSFFTAFIATSGDTGGSAAYSVCGKPNIDVVVLYPQTFVSEIQAMMMTS
IPDDNVHVYAVEGDMMDIDELMIEILYDKEFVANNNLGTMNSITFCRLMVQMAHHIWAYL
QAAKVIGDYVDIVVPTGGAGNITACFLAQLSGVPIRAHAVTNINDCFHQIVTNNSVKLAK
VKKTLAPAMDISFPGNFERVIWLASNQSGEIVSAAINTFLNGEEMHLPEFVHNKIQKYMQ
TAIIDQEGIKSAMLKCYSEHKYFVCPHTATALSYIFTRNLDKDYKNVVAMATAHPAKFPE
ILESVGLPPVPSTIVDGIRKQEKR

Nucleotide sequence

Length: 1,335

>Phmamm.CG.MTP2014.S38.g01501.01.t
ATGAAATTCCGAAGCACCCGTGGATCTGATCAGCTGATTACCTTTGAAGAGACATTGTTA
TCGGCCTATGGAAAAGATGGAGGAATGTGGATGGCTGAACGTGTTCCTGAAATTTCCTTG
GAAACCCTAAAAGATTGGAAACATCTTTCTTACATTGAAGTTGTGCAGAAAGTTGTTGCT
TTGCATGTTTCAGAAGATGAGATTCCCTATAAAGAGCAAGAGGAACTTTTGAATAGAGCA
TACCAAAAGTTTAATATCAAAGAGGTTGTCAAAATGGCTGCTTTAACAAAGCAAGTACAA
GTTATGGAGCTGTTTCATGGTGAATCTATGGCATTTAAAGATCTTGCAATGTGCTGTGTA
TCAGAATTTCTCCAGTATTTTCTCGAAAAACGAAAATCATTCTTTACTGCATTCATTGCG
ACATCTGGTGACACTGGAGGCAGTGCTGCATACAGTGTGTGTGGAAAACCTAATATTGAT
GTGGTTGTTTTGTATCCTCAAACATTTGTAAGTGAAATCCAAGCTATGATGATGACATCA
ATACCTGACGATAATGTGCATGTGTATGCTGTTGAGGGTGATATGATGGATATTGATGAA
CTAATGATTGAGATACTTTATGACAAAGAGTTTGTTGCAAACAACAACCTTGGCACAATG
AATTCAATCACTTTCTGCCGCCTTATGGTGCAGATGGCCCATCACATTTGGGCATATTTA
CAAGCTGCTAAAGTCATTGGTGATTATGTTGACATTGTTGTCCCTACAGGTGGAGCTGGA
AATATTACTGCTTGTTTTTTGGCTCAACTAAGTGGGGTTCCTATCCGAGCTCATGCTGTT
ACGAATATCAATGATTGCTTTCATCAAATTGTCACAAACAACAGTGTTAAACTAGCCAAA
GTAAAGAAAACTCTAGCCCCTGCAATGGATATATCGTTTCCAGGAAATTTTGAAAGGGTA
ATATGGCTGGCATCAAACCAATCAGGTGAAATTGTTTCTGCAGCTATCAATACTTTTCTG
AATGGAGAGGAAATGCATTTGCCAGAATTTGTTCATAACAAAATCCAAAAATATATGCAA
ACTGCAATTATTGACCAGGAGGGAATCAAGTCAGCTATGTTGAAATGCTACTCAGAACAC
AAATATTTTGTCTGTCCACATACGGCTACAGCACTTTCCTACATTTTCACGAGAAACTTG
GACAAGGATTATAAAAATGTGGTTGCCATGGCTACAGCCCATCCAGCAAAATTTCCAGAA
ATATTGGAATCTGTTGGTTTGCCACCAGTACCTTCCACAATAGTTGATGGCATAAGAAAA
CAGGAAAAACGGTAA

InterProScan

SUPERFAMILY	Trypto_synt_PLP_dependent (IPR036052) - T[1-426] 4.71E-104
Gene3D	Thr_synth_N_sf (IPR037158) - T[1-87] 7.5E-20
Pfam	Thr_synth_N (IPR029144) - T[2-81] 7.1E-18
TIGRFAM	Thr_synthase-like (IPR004450) - T[70-423] 8.3E-55
Pfam	PLP-dep (IPR001926) - T[103-333] 3.8E-12

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
THNS2_HUMAN	38.717 %	344	1.21E-114
THNS1_HUMAN	25.532 %	147	1.71E-38