- Transcript 'Boleac.CG.SB_v3.S469...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Cisavi.CG.ENS81.R488...' >
- Clone 'cima879639' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S387.g08142.01.t
Possible name(s)
TRIM2; TRIM3; TRIM71
Gene model
Location
S387 [56,307 / 65,462]
Amino acid sequence
Length: 774
>Phmamm.CG.MTP2014.S387.g08142.01.p
MSPTRLRTRSAPDYNIFKENIRFAGHMMASSIDLLTKINDEFLTCQICFETYTRPKSLNC
QHTFCLKCLEEYTPPNSTEVICPTCRCEQPLTPQGINGLKDNFFISSMSDMLKTVKEIRS
EDKDGTSLMCDTCDHDNRKVAISRCLDCTDFLCTECSTWHIRTKLTRHHKIVSLTEFESG
IHNQELKSRAKIYCMIHDGEVAKIYCQSCQCPICHECVECGHSRHRRCSLKEEVLNQGHQ
IENLLKTAREKTDVLRTLQTTLKDLKQVKKNDRENVEVEIEKTCEVFVNAIHKRKQELID
ELHNMHATEIKHINADEDSVEMQLSSLVSCMEFSRKVLEYGTPKEVLGLNNQMTQILHQL
LETHPAHTYHKTEETDTINFDTNADASVRVIRDNLGKLHILKTAFDEQVNKVLRQLDSFC
ASDSALVLKHNGKVHFHREESTETKLVLQLGKQGIAEGEFESTPNLAVNSVNEVITADYD
GAKIQIFDPQGNFKDSFVTEVNKRMCKPAGIAILHNDDIAVCCEDQVHIWTHEGKSVIGF
GKGLFGNCSSIAVDVENRIIVADVGKHCIFIHTDDGKLVTQFGAQGKGESKLVEPRYVAS
DSQCNVIVSDGGDCSVKKFTAQGEFLLSFGAEGPERGQFQGPRGICTDRHDNILVADCWN
HRVDIFTPDGCFMRHIATDSLHFPWCITLTTNGKLVLSEDYSWSVKVFELPEYRNSSSMS
SMEEIISPTALIPDFDQLAGQFDLPNLLSNKVSWWLTSPNHHDSDHQQMNGIHN
Nucleotide sequence
Length: 4,957
>Phmamm.CG.MTP2014.S387.g08142.01.t
CGACACTCGAGTTGACAAAAGTATTTTCATCCTTTTAAATTGTTGCCATTGGTGGGTCAA
AATGAATGAAAAATCAAAAAAATGTTCTTGATTTAAAACATGTCAGACTTTTATTGGTGC
AACAATTTTAATAGCACTTTTGCTCATCAAAACTTTCTGTGACTGCCAGATAGAAAAACG
CATCCCTTGCTTTACATATTGAAGGGGAAAATAAATAACGTTTCTCGTCACAAAAATTAC
ACGTTTTCAAAACCCCACACAGCTTAAGTGGAATGACACGAAATCTGTTTTTGTTGGTGC
ACATTCGTGTCCACAGGTTTGGGTCGCTTGAGTTATTTAGGTCGAGCCCAGGACAATAGA
TCCTTTGTTAATCCCCGCACCTGCTATCCCATAACAAACCACGCGGCATAACGTTATGGC
AACACAACTAGGCTCCATGGGGAATCAATTCTACTACAACCGACGTTTGTTTGCGGAAAT
CGGGTTGCAAGGATAACATGACATTAAACCGCACATCTACAAACATCACAAAATGCGGAA
CGATTCAACACACGTGGTTTCCACGTCGCAGCACGAACTCACCTATTGTCGCAAGTCAAG
TGATGTAAACAGTAGTTGGCGCCGAGCACCTTTTAAAACTGCGACTAACTCGACAAAGAA
TTTTGCGCAGCAGCAACCTCGGGTTACCTGCAAAAAACTACAGCAATCTTGGACGAGATT
TGAACTGGAGGCGTGCTGTGGTGTAATAAGGCACGATTAGGTTCGCTCGAATTCATGAGC
GGTCCAACAACTGTTTGAAGTTATTTTGATCCCCTATCCGCTGAAATGGTGGGCGAGGTC
AAGCTACGCCAGTTATTTGTTGTCTTTTCTGTCTTTCTGTAAAACCACCGCCGTCCATTC
TCTTTCTCTTTCAACGGTGCAGCTCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGATCGGCGGGAAAAAAGGGCG
CAGATTGCTGACTGTGGCAATGACAATACAACAGGCGAGAGGTTGCTCAACCTGTAGAAG
GAGCGCACATCTGCGTAGTTGGGTTTGGCATCGTAGAACGGAAACTTTAATCTCGTTAAA
AATGGGTGAGCTATTTGTCGGAGTCAAGTAAAGGGTCGTAGAAAAGGTTGTTTTAGGAAA
ACCAAAGATCAGAAAAATGAAGTAGCCCATACCCAGTGAAGAAGTTGTGTAATGTGCAGA
CTGCAGACATACATTTTCAGTATCATATAAAGTTTTAACTAAAACATTACAGTTTAGAAT
GAGGATTTGACCAGAAAGAGTGTGATGGCGAAATGCAGTTGATTTCGCACGTTCGTGATA
ACTCCCGCACAGTTTATGGAAGTAGAGTCGTGGGAGTTCTGCCAGCTTGCCATCACCCGC
AAATATGTAAGATCGGTTCTAACCGAAAATCGTCCAGGCATAAAATAGCTTCGTCCGCAC
AGTGGGTGAGGTTTTTTCAGATGTTGTTCGCAGATATTTGAATGCAGTCATGCATACAAC
CTACGCAGCCCCAAGTGTCAGATATATCAGAAAAAATAACCAAGTATCCGCAGAAAACTA
GACTTTTGTCAAAAGCTTAATTTGATAGAACATAATGCTACAGGTGAATCATTAAAGCTT
GCTCTCAAAACGTGACCTCTTATGCGGCAAGGCACGGAAACGGCATACCGCAACGCTATT
TGCGTAACTCAAAACATTTGCCCGCGATTCCCAGACACAGGGAAGCTCGCATATGTAAAA
AATAATCATGACATCATAGGCTGGGAGTGAATACAGGTAACCAAAAATGTTTCCAGTAAT
ATCCGAATGTTTTCGGTAAGTTCTTTAAATGACTGTTGAAATTGATTTACTGGTCGCGCC
ACCCCCGAGTGCACAGGGCCCAACATCTAATCAAACAAACACGCTATTTGGAAACTAGTC
AGTTTACAAGCGCTCTGACATAGTTTAACGAACTGTAACAACAGTTGGTTGCAGGAACAG
CAGCGATAGGAGACAAATGTAGGACAACGTGAGAAGGAAAGTAAACTAATAAAGTGTGCG
CAGGGTTACATAGCAAAAGCAGGAATATCTAATTGCTTCGGGTGGCATTTCACCAACAAA
GCGTTTGCGTCTTTGGTTTCGGATATAAGCGGATGGAATATTTGTAACTGCGGTAAAGAT
TTGGAAATTAGAATCTGTCGCGGTTCGACGAATTTCAAGTGGCTGTCAACGAAAATCGTT
TCCCACGCAATCACCCGACCCAAGCTAAAAAGTAGTGAGGCAGGATGACAATCCAACTCA
GAGTTGGCCAGTGGTGATTTGTGGTTACAGAAAACCTGTAGCAATGTTTAAGCACAGAAT
TTCTGCATAGTGGCGGCAACCATAGAATTTGTTTTCAAATAGCAAAACGTGTTTACTGAA
TTTCACCCTGAGGCGTAACCAAGCTTGATATCTTATTTGGTTTCACCACAGGATCGTGGA
ATAGTATAGGACTGTGGTTTTGACAAACGTTTCGAAAAACATATCAACTTGCCAGAAATC
GCGGGGCGGCAAATAGCTGCTTCAGTGATTTTCAGAGTTTAACCGCCAGCACTCATGAGT
CCAACGAGGTTAAGAACGCGCTCGGCACCAGACTACAATATCTTCAAGGAAAACATCAGG
TTTGCCGGACATATGATGGCGAGTTCAATCGACTTGCTGACCAAGATCAACGATGAGTTT
CTCACTTGTCAAATCTGCTTCGAGACGTACACTAGACCGAAAAGCCTCAACTGCCAGCAC
ACCTTCTGCCTGAAGTGCCTTGAAGAGTACACGCCGCCCAACAGCACGGAAGTGATCTGT
CCCACCTGTCGATGCGAACAACCGCTTACCCCACAAGGCATCAACGGCCTGAAGGACAAT
TTCTTCATTTCAAGTATGTCAGACATGCTGAAAACAGTGAAGGAAATTCGCAGTGAAGAC
AAGGACGGCACCTCTCTGATGTGTGACACTTGCGACCACGACAACCGCAAGGTGGCGATT
TCGCGTTGTTTGGATTGCACAGATTTTCTTTGCACGGAATGTTCGACATGGCACATCCGC
ACCAAGTTGACCAGACATCACAAGATCGTCTCGCTCACAGAGTTTGAATCTGGAATCCAC
AACCAGGAGTTGAAGAGCAGAGCAAAGATATATTGTATGATACACGACGGGGAGGTAGCC
AAAATCTATTGTCAATCATGTCAATGCCCAATCTGCCACGAATGTGTGGAATGCGGTCAC
TCCCGGCACAGACGATGCTCATTAAAAGAGGAAGTGCTAAACCAAGGGCACCAGATCGAA
AACCTTCTCAAGACAGCAAGGGAGAAGACAGACGTGCTACGAACGCTGCAAACAACTTTA
AAAGACCTCAAACAAGTAAAAAAGAATGACCGGGAAAACGTGGAAGTTGAAATCGAGAAG
ACCTGCGAAGTTTTTGTTAACGCCATTCACAAGCGCAAGCAGGAGTTAATCGATGAGTTA
CACAACATGCACGCAACTGAAATCAAGCACATAAACGCGGATGAAGATTCGGTCGAAATG
CAATTGAGCTCTTTGGTTTCCTGCATGGAATTTTCGCGAAAGGTTCTTGAGTACGGGACG
CCGAAAGAAGTGTTGGGGTTGAATAACCAGATGACACAGATTCTTCACCAACTATTAGAG
ACACATCCAGCCCACACATATCATAAGACAGAAGAAACTGACACGATCAATTTCGATACA
AATGCCGATGCTAGTGTACGAGTAATAAGAGACAACCTGGGAAAACTTCACATTCTGAAG
ACAGCGTTCGACGAACAAGTAAACAAGGTTCTGCGCCAGTTGGACTCATTTTGCGCCTCA
GACTCGGCACTTGTGCTAAAGCACAACGGCAAAGTTCACTTTCATCGGGAGGAATCAACC
GAAACAAAACTTGTTTTGCAGCTTGGTAAACAAGGAATCGCGGAAGGCGAGTTTGAATCG
ACACCAAACCTTGCAGTTAACTCAGTGAATGAGGTTATCACCGCTGATTACGATGGAGCC
AAGATTCAAATATTTGACCCTCAAGGGAACTTCAAAGACTCATTCGTCACCGAAGTTAAC
AAACGAATGTGCAAACCTGCTGGAATTGCCATTCTGCACAACGACGATATTGCTGTATGC
TGTGAAGATCAAGTTCATATTTGGACTCATGAAGGAAAGAGTGTGATCGGATTCGGAAAA
GGGTTATTCGGAAACTGTTCGAGCATTGCCGTGGACGTTGAGAACCGAATAATCGTGGCT
GATGTAGGAAAACATTGCATTTTCATTCACACCGACGACGGAAAGTTAGTGACGCAGTTT
GGTGCGCAAGGAAAGGGTGAAAGCAAGTTAGTGGAACCTCGATACGTTGCCAGCGACTCG
CAATGCAATGTCATTGTGTCAGACGGGGGTGACTGCAGTGTCAAGAAGTTCACAGCACAA
GGGGAGTTCCTATTAAGCTTCGGAGCGGAGGGACCTGAACGAGGACAGTTCCAAGGTCCC
AGGGGAATTTGCACCGATCGTCATGACAACATATTGGTGGCGGATTGTTGGAACCACAGA
GTTGATATATTTACACCAGATGGCTGCTTCATGCGTCACATCGCCACAGACAGTCTCCAT
TTTCCATGGTGCATCACACTCACAACCAACGGCAAACTTGTTCTGTCAGAAGATTACAGC
TGGTCTGTAAAAGTTTTTGAACTTCCAGAATATCGCAACTCTTCATCAATGTCGTCCATG
GAAGAAATCATTTCTCCAACTGCCTTGATACCAGACTTTGACCAATTAGCTGGACAGTTC
GATTTGCCAAACTTGCTTAGTAATAAAGTGTCATGGTGGCTCACCTCACCAAACCATCAC
GATTCGGATCACCAACAAATGAACGGCATTCACAACA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[33-108] 6.7E-14 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[45-86] 13.124 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[45-83] 7.6E-8 |
| SMART |
Znf_RING (IPR001841) - T[45-85] 3.8E-7 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[60-69] . |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[125-174] 8.774 - T[189-230] 10.665 |
| SMART |
Znf_B-box (IPR000315) - T[125-174] 0.013 - T[189-230] 8.9E-4 |
| Pfam |
Znf_B-box (IPR000315) - T[191-230] 8.1E-7 |
| CDD |
Znf_B-box (IPR000315) - T[192-230] 1.09455E-7 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[435-634] 5.6E-41 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[466-490] 7.196 - T[532-575] 8.471 - T[579-622] 9.971 - T[626-669] 15.173 - T[670-711] 4.462 |
| Pfam |
NHL_repeat (IPR001258) - T[639-666] 6.7E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRIM2_HUMAN | 32.491 % | 167 | 4.11E-43 |
| TRIM3_HUMAN | 32.374 % | 159 | 1.32E-40 |
| TRI56_HUMAN | 27.461 % | 147 | 8.17E-37 |