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TRANSCRIPT CARD

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  1. Transcript 'Boschl.CG.Botznik201...'
  2. Transcript 'Cisavi.CG.ENS81.R77....'
  3. Transcript 'Cisavi.CG.ENS81.R488...'
  4. Clone 'cima879639'
  5. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S387.g08142.01.t

Possible name(s)

TRIM2; TRIM3; TRIM71

Location

S387 [56,307 / 65,462]

Sequences

Amino acid sequence

Length: 774

>Phmamm.CG.MTP2014.S387.g08142.01.p
MSPTRLRTRSAPDYNIFKENIRFAGHMMASSIDLLTKINDEFLTCQICFETYTRPKSLNC
QHTFCLKCLEEYTPPNSTEVICPTCRCEQPLTPQGINGLKDNFFISSMSDMLKTVKEIRS
EDKDGTSLMCDTCDHDNRKVAISRCLDCTDFLCTECSTWHIRTKLTRHHKIVSLTEFESG
IHNQELKSRAKIYCMIHDGEVAKIYCQSCQCPICHECVECGHSRHRRCSLKEEVLNQGHQ
IENLLKTAREKTDVLRTLQTTLKDLKQVKKNDRENVEVEIEKTCEVFVNAIHKRKQELID
ELHNMHATEIKHINADEDSVEMQLSSLVSCMEFSRKVLEYGTPKEVLGLNNQMTQILHQL
LETHPAHTYHKTEETDTINFDTNADASVRVIRDNLGKLHILKTAFDEQVNKVLRQLDSFC
ASDSALVLKHNGKVHFHREESTETKLVLQLGKQGIAEGEFESTPNLAVNSVNEVITADYD
GAKIQIFDPQGNFKDSFVTEVNKRMCKPAGIAILHNDDIAVCCEDQVHIWTHEGKSVIGF
GKGLFGNCSSIAVDVENRIIVADVGKHCIFIHTDDGKLVTQFGAQGKGESKLVEPRYVAS
DSQCNVIVSDGGDCSVKKFTAQGEFLLSFGAEGPERGQFQGPRGICTDRHDNILVADCWN
HRVDIFTPDGCFMRHIATDSLHFPWCITLTTNGKLVLSEDYSWSVKVFELPEYRNSSSMS
SMEEIISPTALIPDFDQLAGQFDLPNLLSNKVSWWLTSPNHHDSDHQQMNGIHN

Nucleotide sequence

Length: 4,957

>Phmamm.CG.MTP2014.S387.g08142.01.t
CGACACTCGAGTTGACAAAAGTATTTTCATCCTTTTAAATTGTTGCCATTGGTGGGTCAA
AATGAATGAAAAATCAAAAAAATGTTCTTGATTTAAAACATGTCAGACTTTTATTGGTGC
AACAATTTTAATAGCACTTTTGCTCATCAAAACTTTCTGTGACTGCCAGATAGAAAAACG
CATCCCTTGCTTTACATATTGAAGGGGAAAATAAATAACGTTTCTCGTCACAAAAATTAC
ACGTTTTCAAAACCCCACACAGCTTAAGTGGAATGACACGAAATCTGTTTTTGTTGGTGC
ACATTCGTGTCCACAGGTTTGGGTCGCTTGAGTTATTTAGGTCGAGCCCAGGACAATAGA
TCCTTTGTTAATCCCCGCACCTGCTATCCCATAACAAACCACGCGGCATAACGTTATGGC
AACACAACTAGGCTCCATGGGGAATCAATTCTACTACAACCGACGTTTGTTTGCGGAAAT
CGGGTTGCAAGGATAACATGACATTAAACCGCACATCTACAAACATCACAAAATGCGGAA
CGATTCAACACACGTGGTTTCCACGTCGCAGCACGAACTCACCTATTGTCGCAAGTCAAG
TGATGTAAACAGTAGTTGGCGCCGAGCACCTTTTAAAACTGCGACTAACTCGACAAAGAA
TTTTGCGCAGCAGCAACCTCGGGTTACCTGCAAAAAACTACAGCAATCTTGGACGAGATT
TGAACTGGAGGCGTGCTGTGGTGTAATAAGGCACGATTAGGTTCGCTCGAATTCATGAGC
GGTCCAACAACTGTTTGAAGTTATTTTGATCCCCTATCCGCTGAAATGGTGGGCGAGGTC
AAGCTACGCCAGTTATTTGTTGTCTTTTCTGTCTTTCTGTAAAACCACCGCCGTCCATTC
TCTTTCTCTTTCAACGGTGCAGCTCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGATCGGCGGGAAAAAAGGGCG
CAGATTGCTGACTGTGGCAATGACAATACAACAGGCGAGAGGTTGCTCAACCTGTAGAAG
GAGCGCACATCTGCGTAGTTGGGTTTGGCATCGTAGAACGGAAACTTTAATCTCGTTAAA
AATGGGTGAGCTATTTGTCGGAGTCAAGTAAAGGGTCGTAGAAAAGGTTGTTTTAGGAAA
ACCAAAGATCAGAAAAATGAAGTAGCCCATACCCAGTGAAGAAGTTGTGTAATGTGCAGA
CTGCAGACATACATTTTCAGTATCATATAAAGTTTTAACTAAAACATTACAGTTTAGAAT
GAGGATTTGACCAGAAAGAGTGTGATGGCGAAATGCAGTTGATTTCGCACGTTCGTGATA
ACTCCCGCACAGTTTATGGAAGTAGAGTCGTGGGAGTTCTGCCAGCTTGCCATCACCCGC
AAATATGTAAGATCGGTTCTAACCGAAAATCGTCCAGGCATAAAATAGCTTCGTCCGCAC
AGTGGGTGAGGTTTTTTCAGATGTTGTTCGCAGATATTTGAATGCAGTCATGCATACAAC
CTACGCAGCCCCAAGTGTCAGATATATCAGAAAAAATAACCAAGTATCCGCAGAAAACTA
GACTTTTGTCAAAAGCTTAATTTGATAGAACATAATGCTACAGGTGAATCATTAAAGCTT
GCTCTCAAAACGTGACCTCTTATGCGGCAAGGCACGGAAACGGCATACCGCAACGCTATT
TGCGTAACTCAAAACATTTGCCCGCGATTCCCAGACACAGGGAAGCTCGCATATGTAAAA
AATAATCATGACATCATAGGCTGGGAGTGAATACAGGTAACCAAAAATGTTTCCAGTAAT
ATCCGAATGTTTTCGGTAAGTTCTTTAAATGACTGTTGAAATTGATTTACTGGTCGCGCC
ACCCCCGAGTGCACAGGGCCCAACATCTAATCAAACAAACACGCTATTTGGAAACTAGTC
AGTTTACAAGCGCTCTGACATAGTTTAACGAACTGTAACAACAGTTGGTTGCAGGAACAG
CAGCGATAGGAGACAAATGTAGGACAACGTGAGAAGGAAAGTAAACTAATAAAGTGTGCG
CAGGGTTACATAGCAAAAGCAGGAATATCTAATTGCTTCGGGTGGCATTTCACCAACAAA
GCGTTTGCGTCTTTGGTTTCGGATATAAGCGGATGGAATATTTGTAACTGCGGTAAAGAT
TTGGAAATTAGAATCTGTCGCGGTTCGACGAATTTCAAGTGGCTGTCAACGAAAATCGTT
TCCCACGCAATCACCCGACCCAAGCTAAAAAGTAGTGAGGCAGGATGACAATCCAACTCA
GAGTTGGCCAGTGGTGATTTGTGGTTACAGAAAACCTGTAGCAATGTTTAAGCACAGAAT
TTCTGCATAGTGGCGGCAACCATAGAATTTGTTTTCAAATAGCAAAACGTGTTTACTGAA
TTTCACCCTGAGGCGTAACCAAGCTTGATATCTTATTTGGTTTCACCACAGGATCGTGGA
ATAGTATAGGACTGTGGTTTTGACAAACGTTTCGAAAAACATATCAACTTGCCAGAAATC
GCGGGGCGGCAAATAGCTGCTTCAGTGATTTTCAGAGTTTAACCGCCAGCACTCATGAGT
CCAACGAGGTTAAGAACGCGCTCGGCACCAGACTACAATATCTTCAAGGAAAACATCAGG
TTTGCCGGACATATGATGGCGAGTTCAATCGACTTGCTGACCAAGATCAACGATGAGTTT
CTCACTTGTCAAATCTGCTTCGAGACGTACACTAGACCGAAAAGCCTCAACTGCCAGCAC
ACCTTCTGCCTGAAGTGCCTTGAAGAGTACACGCCGCCCAACAGCACGGAAGTGATCTGT
CCCACCTGTCGATGCGAACAACCGCTTACCCCACAAGGCATCAACGGCCTGAAGGACAAT
TTCTTCATTTCAAGTATGTCAGACATGCTGAAAACAGTGAAGGAAATTCGCAGTGAAGAC
AAGGACGGCACCTCTCTGATGTGTGACACTTGCGACCACGACAACCGCAAGGTGGCGATT
TCGCGTTGTTTGGATTGCACAGATTTTCTTTGCACGGAATGTTCGACATGGCACATCCGC
ACCAAGTTGACCAGACATCACAAGATCGTCTCGCTCACAGAGTTTGAATCTGGAATCCAC
AACCAGGAGTTGAAGAGCAGAGCAAAGATATATTGTATGATACACGACGGGGAGGTAGCC
AAAATCTATTGTCAATCATGTCAATGCCCAATCTGCCACGAATGTGTGGAATGCGGTCAC
TCCCGGCACAGACGATGCTCATTAAAAGAGGAAGTGCTAAACCAAGGGCACCAGATCGAA
AACCTTCTCAAGACAGCAAGGGAGAAGACAGACGTGCTACGAACGCTGCAAACAACTTTA
AAAGACCTCAAACAAGTAAAAAAGAATGACCGGGAAAACGTGGAAGTTGAAATCGAGAAG
ACCTGCGAAGTTTTTGTTAACGCCATTCACAAGCGCAAGCAGGAGTTAATCGATGAGTTA
CACAACATGCACGCAACTGAAATCAAGCACATAAACGCGGATGAAGATTCGGTCGAAATG
CAATTGAGCTCTTTGGTTTCCTGCATGGAATTTTCGCGAAAGGTTCTTGAGTACGGGACG
CCGAAAGAAGTGTTGGGGTTGAATAACCAGATGACACAGATTCTTCACCAACTATTAGAG
ACACATCCAGCCCACACATATCATAAGACAGAAGAAACTGACACGATCAATTTCGATACA
AATGCCGATGCTAGTGTACGAGTAATAAGAGACAACCTGGGAAAACTTCACATTCTGAAG
ACAGCGTTCGACGAACAAGTAAACAAGGTTCTGCGCCAGTTGGACTCATTTTGCGCCTCA
GACTCGGCACTTGTGCTAAAGCACAACGGCAAAGTTCACTTTCATCGGGAGGAATCAACC
GAAACAAAACTTGTTTTGCAGCTTGGTAAACAAGGAATCGCGGAAGGCGAGTTTGAATCG
ACACCAAACCTTGCAGTTAACTCAGTGAATGAGGTTATCACCGCTGATTACGATGGAGCC
AAGATTCAAATATTTGACCCTCAAGGGAACTTCAAAGACTCATTCGTCACCGAAGTTAAC
AAACGAATGTGCAAACCTGCTGGAATTGCCATTCTGCACAACGACGATATTGCTGTATGC
TGTGAAGATCAAGTTCATATTTGGACTCATGAAGGAAAGAGTGTGATCGGATTCGGAAAA
GGGTTATTCGGAAACTGTTCGAGCATTGCCGTGGACGTTGAGAACCGAATAATCGTGGCT
GATGTAGGAAAACATTGCATTTTCATTCACACCGACGACGGAAAGTTAGTGACGCAGTTT
GGTGCGCAAGGAAAGGGTGAAAGCAAGTTAGTGGAACCTCGATACGTTGCCAGCGACTCG
CAATGCAATGTCATTGTGTCAGACGGGGGTGACTGCAGTGTCAAGAAGTTCACAGCACAA
GGGGAGTTCCTATTAAGCTTCGGAGCGGAGGGACCTGAACGAGGACAGTTCCAAGGTCCC
AGGGGAATTTGCACCGATCGTCATGACAACATATTGGTGGCGGATTGTTGGAACCACAGA
GTTGATATATTTACACCAGATGGCTGCTTCATGCGTCACATCGCCACAGACAGTCTCCAT
TTTCCATGGTGCATCACACTCACAACCAACGGCAAACTTGTTCTGTCAGAAGATTACAGC
TGGTCTGTAAAAGTTTTTGAACTTCCAGAATATCGCAACTCTTCATCAATGTCGTCCATG
GAAGAAATCATTTCTCCAACTGCCTTGATACCAGACTTTGACCAATTAGCTGGACAGTTC
GATTTGCCAAACTTGCTTAGTAATAAAGTGTCATGGTGGCTCACCTCACCAAACCATCAC
GATTCGGATCACCAACAAATGAACGGCATTCACAACA

InterProScan

Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[33-108] 6.7E-14
ProSiteProfiles
Znf_RING (IPR001841) - T[45-86] 13.124
Pfam
Znf-RING_LisH (IPR027370) - T[45-83] 7.6E-8
SMART
Znf_RING (IPR001841) - T[45-85] 3.8E-7
ProSitePatterns
Znf_RING_CS (IPR017907) - T[60-69] .
ProSiteProfiles
Znf_B-box (IPR000315) - T[125-174] 8.774 - T[189-230] 10.665
SMART
Znf_B-box (IPR000315) - T[125-174] 0.013 - T[189-230] 8.9E-4
Pfam
Znf_B-box (IPR000315) - T[191-230] 8.1E-7
CDD
Znf_B-box (IPR000315) - T[192-230] 1.09455E-7
Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[435-634] 5.6E-41
ProSiteProfiles
NHL_repeat_subgr (IPR013017) - T[466-490] 7.196 - T[532-575] 8.471 - T[579-622] 9.971 - T[626-669] 15.173 - T[670-711] 4.462
Pfam
NHL_repeat (IPR001258) - T[639-666] 6.7E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRIM2_HUMAN 32.491 % 167 4.11E-43
TRIM3_HUMAN 32.374 % 159 1.32E-40
TRI56_HUMAN 27.461 % 147 8.17E-37