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  1. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S37.g01446.02.t

Possible name(s)

CEP78; NLRC3; NLRP14

Location

S37 [114,317 / 116,117]

Sequences

Amino acid sequence

Length: 599

>Phmamm.CG.MTP2014.S37.g01446.02.p
MANVPESVAVRQRGAFDFIGTYDNLCALQSTVPLVYVKARVKEGLLDINGDRVRMIDWSP
ILNAIKINKNLRYIALRSYFQHSSAGTNAKKSHYFKRRTPAICFKDVTLLAARSLASCLC
VTKALKCLDLQGVPLRKKDIEILTKGIAKNKTLTHVLLDYCQIADSGVAALCQSLKNHPS
ITHVSLAGCNITPVGAAVISKLVKHQSTQRYSDAWADGLRYRSPDLNCMAGIRRITLNSN
PMIGDSGISAIADALKDDLWLKALDLQNCGLSVVGAKYLLTTMEHNRTLIVLDIRQNPMV
DNNTLRSVLGRVLLNANERDEAAFPWIKEEPPKDPYKTKNHRQPRGHSHCKKSIIAKWSS
PSEGVPCVLPAGHKGFVPWRTAVRASKHQLGLSDEEDDSDVLQLKILDDDSTDELNPKTS
DRKPEINENIRALKIHLLDAQRRLIRSKENEEILNQKIMTLEVENSRLRKELNSTLENSK
IKSQIEDEMLLESIDKSFNKFHEFLNMLSDMGLGSLVTAAGLDPTTPKQPFSVRSKSTTS
HSKARLDKADLDDEHNEEEKMFQSDAIVIEGTGKNKQKSDPKVRDQEESTDIHSVNSQT

Nucleotide sequence

Length: 1,800

>Phmamm.CG.MTP2014.S37.g01446.02.t
ATGGCTAATGTTCCTGAGAGTGTAGCAGTTCGTCAACGCGGTGCTTTTGACTTTATTGGC
ACGTATGACAATCTTTGCGCATTGCAAAGCACTGTGCCTTTGGTTTATGTAAAAGCTCGC
GTAAAAGAAGGACTTTTGGACATAAACGGTGACAGAGTGCGGATGATAGATTGGTCTCCG
ATACTTAATGCTATCAAGATAAACAAAAATCTGAGATACATTGCCCTACGGAGCTATTTT
CAGCATTCCTCTGCTGGTACAAATGCAAAAAAGTCGCACTACTTTAAAAGGCGCACCCCA
GCGATTTGCTTTAAAGATGTAACGCTTTTAGCTGCACGGTCCCTTGCATCTTGTCTTTGT
GTTACCAAAGCTCTAAAATGTTTGGATCTACAAGGTGTACCTCTCCGGAAAAAAGACATT
GAAATTTTGACGAAGGGAATTGCCAAAAACAAAACCCTGACTCATGTGTTACTTGACTAC
TGCCAGATTGCTGACAGTGGTGTTGCTGCATTGTGCCAGTCACTGAAAAACCATCCAAGT
ATTACGCATGTAAGTCTTGCAGGATGCAACATCACTCCAGTTGGCGCTGCTGTCATAAGT
AAATTGGTCAAACACCAATCAACGCAGAGATACAGCGATGCATGGGCAGATGGTTTAAGA
TACAGATCACCTGATTTGAATTGCATGGCTGGCATTCGTAGAATTACACTTAATTCCAAT
CCTATGATTGGAGATTCTGGAATATCAGCGATTGCTGATGCTTTGAAAGATGATTTGTGG
TTGAAAGCTTTAGATTTGCAAAATTGTGGTTTGTCTGTTGTTGGGGCCAAGTATTTGTTG
ACGACCATGGAACACAACAGGACTCTCATTGTTTTAGACATTCGCCAAAATCCTATGGTT
GATAATAACACATTAAGGAGTGTACTTGGCCGAGTTTTGCTTAATGCCAATGAAAGAGAT
GAAGCTGCGTTTCCATGGATCAAAGAAGAACCTCCAAAAGATCCATACAAAACCAAAAAT
CATAGACAGCCAAGGGGTCATTCACATTGCAAAAAGAGCATAATTGCCAAATGGTCAAGC
CCTTCTGAAGGTGTGCCTTGTGTTTTGCCAGCTGGCCATAAGGGATTTGTACCTTGGAGA
ACTGCTGTTCGAGCATCCAAGCATCAGTTGGGCTTATCGGATGAAGAAGATGACTCTGAT
GTGCTGCAATTAAAAATTTTAGATGACGATTCAACTGATGAACTTAATCCCAAGACTTCT
GACAGAAAACCTGAAATCAATGAGAACATTAGAGCTCTGAAAATACACCTTTTAGATGCA
CAGCGGAGATTGATAAGATCGAAAGAAAATGAAGAGATCCTGAATCAAAAAATAATGACA
TTGGAGGTTGAAAATTCAAGACTAAGAAAGGAGCTTAACAGCACTTTGGAAAATTCAAAA
ATAAAATCCCAAATTGAAGACGAAATGCTTCTGGAGAGCATTGATAAATCGTTTAACAAA
TTTCATGAGTTTTTAAACATGTTAAGTGACATGGGTCTTGGGTCACTTGTTACTGCCGCT
GGTCTTGACCCCACAACACCCAAGCAGCCATTTTCAGTTAGGTCTAAATCCACCACAAGC
CATTCCAAAGCCAGACTGGACAAAGCTGACTTGGATGACGAACATAATGAAGAGGAAAAA
ATGTTTCAGTCTGATGCTATTGTTATTGAAGGTACTGGCAAAAATAAACAGAAATCTGAT
CCAAAAGTAAGAGATCAAGAGGAATCTACTGATATTCATTCTGTAAACAGTCAAACATAA

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[18-221] 7.8E-20 - T[229-314] 1.7E-13
Pfam
Leu-rich_rpt (IPR001611) - T[149-172] 0.057 - T[178-199] 0.17 - T[260-279] 1.0
PRINTS
Cep78 (IPR026212) - T[168-189] 2.8E-19 - T[191-206] 2.8E-19 - T[215-233] 2.8E-19 - T[253-272] 2.8E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CEP78_HUMAN 38.255 % 387 1.47E-126