Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S373.g07954.02.t

Possible name(s)

RBPJ; RBPJL

Gene model

Phmamm.CG.MTP2014.S373.g07954

Location

S373 [77,042 / 88,935]

Sequences

Amino acid sequence

Length: 492

>Phmamm.CG.MTP2014.S373.g07954.02.p
MRKYLKERNDLTLVVLHAKVAQKSYGNEKRFFCPPPCMYLLGSGWKKKQQVLEDEEGTPE
AGQVHAFIGIGSNEQDMQQLHLDGKNFCTAKTLYISDTDKRKHFMLNVKMFFGTGADVGQ
FHSKRIKVISKPSKKKQSLKNADLCIPSGTKVALFNRLRSQTVSTRYLHVEKGNFHASSI
QWGCFAIHLLDDDESESEEFSVMDGYIHYGQTVKLVCSNTGMALPRLIIRKVDKQTAILD
ADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKETNKEMINDGASWTIISTDK
AEYTFCDGMGPTADPVTPVPTVHSLQLNGGGDVAMLEVKGENFTPLLKVWFGEIESDTMY
RCAEGLLCVVPDISAFREGWKWVKETVQVPINLVRNDGIIYATNLTFTFTPEAGPRQHCP
SSMSILHPKRPLPTMPPTPGSEDDAGRHTDHEQGMPMKRTALEVNGMPVASDSAVVSTMN
GSALGNMLRTAS

Nucleotide sequence

Length: 1,479

>Phmamm.CG.MTP2014.S373.g07954.02.t
ATGCGCAAATACTTGAAGGAACGCAACGACCTTACCTTGGTTGTGCTGCACGCCAAGGTC
GCTCAGAAGTCCTACGGCAATGAGAAGAGGTTTTTTTGTCCTCCACCCTGTATGTATCTT
TTGGGATCTGGCTGGAAAAAGAAACAACAAGTTCTTGAAGATGAGGAAGGCACCCCAGAA
GCAGGACAGGTTCATGCCTTTATTGGGATTGGCAGCAACGAGCAAGACATGCAGCAACTG
CACTTGGATGGCAAGAACTTTTGCACTGCAAAGACTTTGTATATCTCGGACACAGACAAG
CGCAAGCACTTCATGCTCAACGTAAAGATGTTCTTCGGCACCGGCGCCGATGTCGGTCAG
TTCCACAGCAAACGTATCAAGGTGATCAGTAAGCCGTCCAAGAAGAAGCAGTCGCTCAAG
AACGCTGATCTTTGTATACCGTCCGGAACGAAGGTGGCTCTCTTCAATCGGCTCAGATCC
CAAACCGTCAGCACCCGATACCTTCATGTTGAGAAGGGAAATTTTCACGCAAGCTCAATA
CAATGGGGATGTTTCGCCATTCACCTTCTTGACGATGACGAATCAGAATCGGAAGAATTT
TCGGTGATGGACGGCTACATACATTACGGCCAGACAGTGAAGCTAGTATGTTCAAATACC
GGGATGGCCTTACCAAGGCTAATTATTCGAAAGGTTGACAAACAAACAGCGATATTGGAC
GCCGATGATCCTGTCTCCCAACTCCACAAGTGCGCATTCTACTTGAAAGACACTGAACGA
ATGTACTTGTGTTTGTCCCAGGAAAGGATCATCCAATTTCAGGCGACGCCTTGTCCCAAA
GAAACAAACAAAGAGATGATTAACGATGGCGCATCGTGGACAATCATCAGCACTGACAAA
GCCGAGTACACCTTCTGTGATGGCATGGGACCAACTGCTGACCCTGTTACTCCTGTTCCA
ACCGTGCATAGCCTTCAGTTGAATGGTGGTGGCGACGTGGCAATGCTTGAAGTTAAAGGC
GAAAATTTCACCCCGCTACTGAAGGTTTGGTTTGGAGAGATCGAGTCTGATACGATGTAC
AGATGTGCAGAGGGTTTGTTGTGCGTGGTGCCCGACATATCGGCGTTCAGGGAAGGCTGG
AAATGGGTAAAGGAAACAGTCCAGGTTCCTATTAATCTGGTTCGCAACGACGGGATTATT
TACGCCACCAACCTCACCTTCACATTCACCCCTGAAGCCGGACCTCGACAACACTGTCCA
TCCTCGATGAGTATCCTGCACCCAAAGAGGCCCTTACCCACCATGCCTCCAACGCCGGGT
TCAGAAGACGATGCTGGTCGTCACACGGACCACGAGCAGGGAATGCCAATGAAACGGACT
GCTCTTGAAGTGAACGGCATGCCTGTTGCGTCAGATTCGGCCGTGGTGTCAACCATGAAC
GGTTCCGCTTTAGGTAACATGCTCCGGACTGCCTCATGA

InterProScan

Gene3D	RBP-J/Cbf11/Cbf12_DNA-bd_sf (IPR037095) - T[1-318] 7.5E-163
SUPERFAMILY	p53-like_TF_DNA-bd (IPR008967) - T[1-143] 2.11E-57
SMART	RBP-J/Cbf11/Cbf12_DNA-bd (IPR015351) - T[12-143] 1.3E-81
Pfam	RBP-J/Cbf11/Cbf12_DNA-bd (IPR015351) - T[13-143] 6.3E-48
SUPERFAMILY	BTD_sf (IPR036358) - T[141-298] 2.62E-64
SMART	Beta-trefoil_DNA-bd_dom (IPR015350) - T[144-293] 8.2E-89
Pfam	Beta-trefoil_DNA-bd_dom (IPR015350) - T[144-293] 4.8E-72
SUPERFAMILY	Ig_E-set (IPR014756) - T[299-411] 1.1E-34
CDD	RBP-Jkappa_IPT (IPR038007) - T[315-411] 2.16725E-62
Gene3D	Ig-like_fold (IPR013783) - T[320-413] 2.1E-38

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SUH_HUMAN	76.667 %	737	0
RBPJL_HUMAN	48.707 %	468	5.49E-162