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  1. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S35.g01377.01.t

Possible name(s)

BMI1; COMMD3-BMI1; PCGF2

Gene model

Phmamm.CG.MTP2014.S35.g01377

Location

S35 [204,427 / 208,951]

Sequences

Amino acid sequence

Length: 1,139

>Phmamm.CG.MTP2014.S35.g01377.01.p
MTMNRKVKLRVRELHDHLTCFLCDGYFIDATTIIECLHSFCRTCIVRYLTDHKSCPICNV
QVHKTRPLLNIRSDQTLQEIVYNLVPDLRKNEMKRRRQFWSDHEMIKFDVMCRGLTPEDL
GEVDETKTKKSTKKLCLTIEPYKRRNRKLEPGSEWAELEKEMSKRYLRCSHDVTVKHLHK
LIRMKFKEPENVENQILELKYGLFVPKSLKRKRPAFWDSVDIASLKTQATPTVKKEATKA
KKPISATPQLKAFFNSLKKSTPKRPKLTIKTNGELKTKPSIMDNSLAVENREDHAKIELL
SMVQLTTVEKSPSKSSSDSEVTPPPMLENASHNASNVLAKSTTDLEKSPKPAISQSENHS
SNKNGTSPQPKRTSPNGSKSQESNGKSNKSNNVKCYEMLDIPVAEAVRRKPPTPVEVPEV
ASKIVERPSQVNALSSSFPTPTTTITAVNDAVTDLTPFVQRKSPKRDTKEIRPTPGQQPR
QHRRKPTNPTQYAGNSNTPPVNQDIRRQGGFAPAIPPSNTRPTNDDYLMLDSNAKSVYET
VRINPPPKGGQFILLAPPNNNHDPMGNNRPLAPQPQQQQQRKPPTQNGSQPLRKIEPQPP
RSIQKAPPNGKRPGSQDLSNLSNAAAHRVALDAVRSTMGSVKLQTDRKQAPSKRPILPKT
TSASFSPLVVTGMDGIPQFGNTGPTRNIFQNEKVVYPMGNPVSAQNQRPVAPSNPIPAPS
RQQQIPNKRPANSSQPPESTGFKNKSPRNNPRPITSNTPPFVSNQHVSVNGRNHTGINST
STQHRNIAPATSVPGNNKPFIQTPSKLLNPPTAISRTNLLSHSYNKPSKSPQMTALTHNR
NENNHRRAQEPLQNELLKATLMNQRSGRTGLSPHGKLYVDQRSQALTQPIKPHKTPPSKD
PYQQTTIERTKALVQSLAQQSQNPSTSGVGNVARNGHSKHGQHASTHTPSPKPRSQKLPA
NMRPSPIEAAKLIYQIKESQRVLKNSSSGTSKAAIPNATKRPHQRARSSSRELPSFPVAV
PPAGTKSPWSSRGYPAPAHAGRDFSESEYQPPIKKHFSQPPKAHQSSNSPHSGSIRSPGT
SRLPPNQTLSSDMMPLELTSRTRKSSQSSGSSISSPAPTPPAPPILGADQPLCLVMKKA

Nucleotide sequence

Length: 3,420

>Phmamm.CG.MTP2014.S35.g01377.01.t
ATGACTATGAACCGCAAAGTCAAACTGCGGGTCAGAGAACTGCATGACCATCTGACCTGC
TTTTTGTGTGACGGCTACTTTATTGATGCCACTACGATCATCGAATGCCTACATTCTTTT
TGCCGAACTTGTATTGTGCGCTATCTTACGGACCACAAATCCTGTCCAATTTGCAATGTG
CAAGTCCACAAAACTCGTCCATTGCTCAACATCCGAAGTGACCAGACTTTACAAGAAATC
GTTTACAACCTTGTACCGGATTTGAGAAAAAATGAAATGAAACGCAGACGCCAGTTTTGG
AGCGACCATGAAATGATTAAATTTGACGTAATGTGTCGCGGTCTAACACCTGAAGACTTA
GGAGAAGTGGACGAAACAAAGACCAAAAAATCTACCAAAAAACTTTGTCTAACAATTGAA
CCATACAAAAGACGCAACAGGAAACTGGAACCCGGTAGCGAGTGGGCGGAACTCGAAAAG
GAAATGAGTAAACGCTACCTGAGGTGCTCACATGACGTGACTGTAAAACATTTGCACAAA
CTTATTCGCATGAAGTTCAAGGAGCCAGAAAATGTGGAGAACCAAATCCTGGAATTGAAA
TACGGTTTGTTTGTTCCCAAATCTCTCAAACGTAAACGGCCTGCCTTCTGGGACAGCGTC
GACATCGCAAGTCTTAAGACTCAAGCCACACCAACTGTTAAGAAAGAAGCTACAAAAGCG
AAAAAGCCTATTTCGGCTACACCGCAACTTAAAGCGTTTTTCAACAGTTTAAAGAAGTCG
ACACCCAAAAGGCCAAAGTTGACAATAAAGACAAATGGAGAGCTGAAGACAAAACCTTCG
ATTATGGACAATTCGTTGGCTGTAGAAAATAGAGAAGACCACGCAAAGATTGAGCTATTA
AGTATGGTCCAGCTCACCACAGTGGAGAAGTCACCTTCCAAAAGTTCTTCCGATTCGGAG
GTAACACCTCCGCCTATGTTGGAAAATGCTTCCCACAACGCCTCGAACGTGCTTGCAAAA
TCTACCACCGATCTTGAAAAATCCCCCAAACCCGCGATATCTCAAAGCGAAAACCATAGC
AGCAACAAAAACGGCACATCACCGCAGCCGAAACGCACCTCGCCTAACGGGTCGAAATCG
CAAGAGTCCAATGGGAAAAGCAACAAATCCAACAACGTTAAATGTTACGAAATGCTTGAT
ATTCCAGTGGCTGAAGCGGTGCGACGAAAACCGCCCACACCCGTAGAAGTACCAGAAGTT
GCTTCAAAAATCGTGGAACGCCCTTCGCAGGTCAACGCTTTAAGCAGTTCATTTCCAACT
CCTACCACCACTATTACAGCTGTCAATGACGCTGTAACGGATTTAACGCCTTTCGTCCAA
CGAAAGTCACCTAAACGTGACACAAAGGAAATACGACCAACACCTGGGCAGCAACCAAGG
CAGCATCGACGCAAGCCCACCAATCCTACACAATATGCCGGAAACAGCAACACACCTCCA
GTAAATCAAGATATACGTCGTCAAGGCGGCTTTGCACCCGCGATACCACCCAGCAACACA
CGACCCACGAACGACGATTACCTAATGCTGGATAGTAATGCTAAAAGCGTATACGAAACT
GTGCGAATCAACCCGCCGCCCAAAGGTGGACAGTTTATACTTCTTGCGCCTCCGAATAAT
AATCACGATCCTATGGGTAATAATAGGCCACTTGCTCCACAGCCGCAACAGCAGCAGCAG
CGAAAACCACCAACGCAGAATGGTTCGCAACCGCTTCGTAAAATAGAACCTCAACCGCCA
AGGTCTATTCAGAAGGCACCACCCAATGGCAAAAGGCCGGGCTCTCAAGATCTAAGCAAC
CTTAGCAATGCAGCAGCCCATCGGGTTGCTTTAGATGCGGTTAGAAGCACTATGGGAAGC
GTAAAACTTCAAACTGACAGAAAACAAGCTCCTTCGAAAAGACCGATCCTACCCAAGACC
ACATCGGCTAGTTTTTCACCATTGGTAGTCACAGGTATGGACGGAATCCCTCAGTTCGGC
AACACCGGGCCCACAAGGAACATTTTTCAGAATGAGAAGGTTGTCTATCCGATGGGTAAC
CCGGTCAGCGCGCAAAACCAGCGACCTGTTGCCCCTAGCAATCCAATCCCCGCACCTAGC
CGCCAGCAACAGATTCCAAACAAACGACCAGCTAATTCATCCCAGCCCCCTGAAAGTACT
GGGTTTAAGAACAAGTCACCTCGAAATAACCCACGTCCCATAACATCCAACACCCCGCCG
TTTGTTTCAAACCAGCACGTATCCGTGAACGGTCGAAACCATACCGGAATTAACTCCACA
TCTACACAACACCGTAATATAGCACCTGCAACTTCAGTTCCAGGGAATAACAAACCATTT
ATTCAGACTCCTTCCAAGCTTCTTAACCCACCAACTGCTATATCGCGCACCAATCTGCTT
TCTCACAGCTACAACAAGCCTAGTAAATCGCCACAAATGACCGCACTCACCCACAATCGC
AATGAAAACAACCATCGCCGTGCCCAAGAGCCTCTTCAAAACGAACTGCTTAAAGCGACG
CTTATGAACCAGCGTAGCGGCAGGACAGGCTTAAGTCCCCATGGAAAATTGTACGTCGAC
CAACGTAGCCAGGCATTAACTCAACCTATTAAGCCACACAAAACCCCACCATCTAAAGAC
CCCTACCAGCAAACCACTATAGAAAGAACCAAAGCCCTGGTGCAATCGCTTGCTCAGCAA
AGTCAGAATCCGTCTACATCTGGTGTTGGAAATGTGGCAAGGAATGGACACAGCAAGCAC
GGCCAGCATGCTTCGACACACACGCCGTCTCCGAAACCAAGATCACAGAAACTTCCAGCT
AATATGCGTCCTAGTCCGATAGAAGCCGCAAAACTAATCTATCAGATCAAAGAAAGCCAG
CGTGTATTGAAAAATAGCTCCAGTGGCACCAGCAAGGCAGCCATACCAAATGCCACCAAG
CGGCCTCATCAAAGAGCACGCTCTTCCTCCCGAGAGCTTCCATCTTTTCCAGTGGCAGTT
CCTCCAGCTGGGACAAAGAGTCCATGGTCTTCTCGTGGTTATCCAGCTCCTGCACACGCC
GGACGTGACTTTTCGGAATCGGAATACCAACCTCCAATCAAGAAACACTTCTCGCAACCT
CCCAAAGCTCACCAGTCTTCTAACTCTCCTCATTCAGGAAGCATACGCTCTCCCGGCACT
AGCCGCCTTCCTCCTAACCAAACTCTTTCAAGTGATATGATGCCTCTTGAACTAACTTCC
AGGACAAGAAAGAGTTCGCAGTCAAGCGGGTCATCCATTTCTTCCCCAGCTCCTACTCCA
CCGGCGCCTCCTATACTAGGAGCAGATCAACCATTGTGTCTGGTAATGAAGAAGGCTTAA

InterProScan

Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[3-109] 4.8E-26
ProSiteProfiles
Znf_RING (IPR001841) - T[20-59] 11.545
SMART
Znf_RING (IPR001841) - T[20-58] 7.8E-5
ProSitePatterns
Znf_RING_CS (IPR017907) - T[36-45] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PCGF1_HUMAN 52.632 % 132 2.18E-34
PCGF2_HUMAN 48.5 % 187 3.04E-52
BMI1_HUMAN 51.759 % 193 9.14E-55