- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S359.g07762.02.t
Possible name(s)
AC009690.3; CELF5; CELF6
Gene model
Location
S359 [68,548 / 75,594]
Amino acid sequence
Length: 421
>Phmamm.CG.MTP2014.S359.g07762.02.p
MAMAVQGAAQFIQPTISPMINGAVPLTMHHQSLDSGINPHGFPHTQLSAMHPTHCSINAL
GGLSLPMIKDPMEKEDDAIKLFIGQVPKNWEEKELRQLFSSFGEIYELSVLRDKYTGMHK
GCAFLTFVKKIAALNAQNALHERKTLPGMNHPLQVKPADTVNKGEDRKLFIGMLGKRQTE
EDVQALFEPFGNIEECTILRTPEGQSKGCAFVKLSTNQEARAAIDSLHGSQTMPGASSSL
VVKFADTDKERAIRRMQQMAQTYGLVNPVPVQVGTYSLPYPQTVIPAAGWNSLAAPQPAI
NGLAPATAVLPSQTVLHTGLANQHPTQLSGIPSTPQSPVAPLAAVNMVQPTSSSSVVGST
PEAMYQAYPAQTPPIVELSQPYPQSQPYTVVYVPAQSYGATQYAPAVAPAATPVLPAAAA
G
Nucleotide sequence
Length: 1,544
>Phmamm.CG.MTP2014.S359.g07762.02.t
GCCTGATGACTTATATAATATGCGTATCCAGTAGCCAGCTGCCGTGTTCGACAAGTAGAG
CGACTGGCTCATATATAAGGAGACGAATGTGTATGGTCAAAGCACACTACTATACGGAGT
AGCAGTGATTTCGGTGCGTGAAAATTTTAAATCAAGAAAGAACAAGATATTTTGAGATTC
ATCTAGTTCACTGTACAAAAGAATTTAACGCTGTCTGTTATTGTGTACTAAACAGAAACA
ACTTAGAAGAAACCTAAGTATCAGAAATCAACTAGCAGAATGGCTATGGCTGTTCAAGGT
GCCGCTCAATTTATACAGCCTACTATTTCACCAATGATAAACGGAGCTGTGCCATTAACC
ATGCACCACCAATCACTTGATTCAGGCATTAATCCACATGGTTTTCCACACACACAACTT
TCAGCCATGCATCCCACACATTGCAGCATAAATGCCCTGGGCGGCTTGTCACTTCCAATG
ATAAAAGATCCAATGGAAAAAGAGGATGATGCCATAAAACTGTTTATTGGTCAAGTTCCA
AAGAACTGGGAAGAAAAAGAATTGCGGCAGCTTTTTTCATCATTTGGAGAAATCTATGAA
TTGTCTGTTCTTAGAGACAAATACACCGGCATGCACAAGGGTTGTGCATTTCTTACCTTT
GTCAAGAAGATAGCGGCTTTAAACGCGCAAAATGCTCTACACGAAAGAAAAACTTTGCCA
GGGATGAACCATCCTCTGCAAGTGAAGCCTGCTGACACTGTCAACAAAGGCGAAGACCGA
AAGCTCTTCATCGGGATGTTAGGAAAACGACAAACTGAAGAAGACGTTCAAGCACTATTT
GAACCCTTTGGAAATATCGAGGAGTGTACCATACTTCGAACACCGGAAGGACAAAGCAAG
GGTTGTGCTTTTGTAAAACTCTCAACAAATCAGGAAGCCAGAGCAGCCATTGATTCTCTG
CATGGAAGCCAGACAATGCCTGGAGCATCATCAAGTTTGGTTGTAAAATTTGCCGACACT
GATAAGGAACGTGCCATCAGACGCATGCAGCAGATGGCGCAAACATACGGATTAGTTAAT
CCTGTACCAGTGCAAGTTGGAACATACAGTCTGCCATACCCACAGACTGTCATCCCAGCT
GCTGGATGGAACTCACTGGCTGCGCCGCAACCAGCTATAAACGGCCTTGCTCCGGCTACA
GCTGTCTTACCATCCCAGACAGTTTTGCACACTGGTCTTGCCAACCAACATCCCACCCAG
TTGTCTGGCATTCCGAGCACACCCCAGAGCCCAGTGGCGCCCCTAGCGGCAGTCAACATG
GTCCAACCGACCTCGTCATCATCGGTTGTTGGTTCCACACCTGAGGCAATGTATCAAGCC
TACCCAGCTCAGACGCCGCCTATTGTTGAACTTTCCCAGCCCTACCCGCAATCTCAACCA
TACACAGTAGTGTACGTCCCTGCCCAATCATATGGAGCCACTCAATACGCCCCGGCAGTC
GCCCCTGCAGCTACACCTGTTTTACCCGCTGCTGCTGCCGGGGG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[68-163] 1.3E-24 - T[164-254] 1.8E-26 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[71-160] 1.33E-20 - T[162-258] 1.61E-20 |
| CDD |
CELF3/4/5/6_RRM1 (IPR034648) - T[74-160] 2.26767E-56 |
| PRINTS |
Hud_Sxl_RNA (IPR002343) - T[79-94] 8.6E-5 - T[172-187] 8.6E-5 - T[187-199] 8.6E-5 - T[228-245] 8.6E-5 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[79-160] 15.016 - T[167-247] 16.278 |
| SMART |
RRM_dom (IPR000504) - T[80-156] 2.5E-19 - T[168-243] 3.7E-17 |
| Pfam |
RRM_dom (IPR000504) - T[81-148] 1.3E-14 - T[169-231] 1.7E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CELF6_HUMAN | 65.174 % | 293 | 4.84E-95 |
| CELF3_HUMAN | 50.592 % | 318 | 6.65E-105 |
| CELF4_HUMAN | 65.728 % | 307 | 2.38E-100 |
