- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S359.g07762.01.t
Possible name(s)
AC009690.3; CELF5; CELF6
Gene model
Location
S359 [67,704 / 74,398]
Amino acid sequence
Length: 468
>Phmamm.CG.MTP2014.S359.g07762.01.p
MAVQGAAQFIQPTISPMINGAVPLTMHHQSLDSGINPHDPMEKEDDAIKLFIGQVPKNWE
EKELRQLFSSFGEIYELSVLRDKYTGMHKGCAFLTFVKKIAALNAQNALHERKTLPGMNH
PLQVKPADTVNKGEDRKLFIGMLGKRQTEEDVQALFEPFGNIEECTILRTPEGQSKGCAF
VKLSTNQEARAAIDSLHGSQTMPGASSSLVVKFADTDKERAIRRMQQMAQTYGLVNPVPV
QVGTYSLPYPQTVIPAAGWNSLAAPQPAINGLAPATAVLPSQTVLHTGLANQHPTQLSGI
PSTPQSPVAPLAAVNMVQPTSSSSVVGSTPEAMYQAYPGSQSQCAVAANMNGHAANTMSQ
TPPIVELSQPYPQSQPYTGPEGCNLFIYHLPQDFTDADLRNVFQPFGNVISAKVFIDRAT
NQSKCFGFVSFDNAISSQAAIQTMNGFQIGMKRLKVQLKRPKEQSRPY
Nucleotide sequence
Length: 1,407
>Phmamm.CG.MTP2014.S359.g07762.01.t
ATGGCTGTTCAAGGTGCCGCTCAATTTATACAGCCTACTATTTCACCAATGATAAACGGA
GCTGTGCCATTAACCATGCACCACCAATCACTTGATTCAGGCATTAATCCACATGATCCA
ATGGAAAAAGAGGATGATGCCATAAAACTGTTTATTGGTCAAGTTCCAAAGAACTGGGAA
GAAAAAGAATTGCGGCAGCTTTTTTCATCATTTGGAGAAATCTATGAATTGTCTGTTCTT
AGAGACAAATACACCGGCATGCACAAGGGTTGTGCATTTCTTACCTTTGTCAAGAAGATA
GCGGCTTTAAACGCGCAAAATGCTCTACACGAAAGAAAAACTTTGCCAGGGATGAACCAT
CCTCTGCAAGTGAAGCCTGCTGACACTGTCAACAAAGGCGAAGACCGAAAGCTCTTCATC
GGGATGTTAGGAAAACGACAAACTGAAGAAGACGTTCAAGCACTATTTGAACCCTTTGGA
AATATCGAGGAGTGTACCATACTTCGAACACCGGAAGGACAAAGCAAGGGTTGTGCTTTT
GTAAAACTCTCAACAAATCAGGAAGCCAGAGCAGCCATTGATTCTCTGCATGGAAGCCAG
ACAATGCCTGGAGCATCATCAAGTTTGGTTGTAAAATTTGCCGACACTGATAAGGAACGT
GCCATCAGACGCATGCAGCAGATGGCGCAAACATACGGATTAGTTAATCCTGTACCAGTG
CAAGTTGGAACATACAGTCTGCCATACCCACAGACTGTCATCCCAGCTGCTGGATGGAAC
TCACTGGCTGCGCCGCAACCAGCTATAAACGGCCTTGCTCCGGCTACAGCTGTCTTACCA
TCCCAGACAGTTTTGCACACTGGTCTTGCCAACCAACATCCCACCCAGTTGTCTGGCATT
CCGAGCACACCCCAGAGCCCAGTGGCGCCCCTAGCGGCAGTCAACATGGTCCAACCGACC
TCGTCATCATCGGTTGTTGGTTCCACACCTGAGGCAATGTATCAAGCCTACCCAGGTAGT
CAATCCCAATGTGCTGTTGCCGCAAATATGAATGGGCATGCTGCTAACACCATGTCTCAG
ACGCCGCCTATTGTTGAACTTTCCCAGCCCTACCCGCAATCTCAACCATACACAGGGCCG
GAGGGGTGTAATTTGTTTATTTACCATCTGCCGCAAGATTTTACGGATGCCGATTTGCGC
AACGTTTTTCAACCTTTCGGCAACGTGATTTCGGCCAAAGTCTTCATTGACCGGGCCACA
AATCAAAGTAAATGCTTTGGCTTTGTTAGTTTCGACAATGCCATCAGTTCACAAGCCGCA
ATTCAAACCATGAACGGTTTCCAAATTGGCATGAAACGCCTCAAGGTCCAACTAAAGCGA
CCCAAGGAGCAAAGCAGACCCTACTAA
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[21-129] 8.06E-22 - T[134-464] 2.85E-43 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[37-132] 1.6E-24 - T[133-223] 2.1E-26 - T[367-466] 5.2E-28 |
| CDD |
CELF3/4/5/6_RRM1 (IPR034648) - T[43-129] 4.3138E-56 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[48-129] 15.016 - T[136-216] 16.278 - T[383-461] 17.353 |
| SMART |
RRM_dom (IPR000504) - T[49-125] 2.5E-19 - T[137-212] 3.7E-17 - T[384-457] 2.8E-24 |
| Pfam |
RRM_dom (IPR000504) - T[50-117] 1.5E-14 - T[138-200] 2.0E-14 - T[385-455] 5.8E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CELF6_HUMAN | 52.146 % | 432 | 1.2E-148 |
| CELF5_HUMAN | 50 % | 426 | 3.47E-146 |
| CELF3_HUMAN | 51.502 % | 447 | 8.26E-155 |
