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TRANSCRIPT CARD

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  1. Molecular Tool 'SoxC-MO (Imai's 25mer MO)'
  2. Transcript 'KH2012:KH.C7.125.v2....'
  3. Molecular Tool 'Ci-Bra -3.5Kb/Ci-Su(H)DBD-WRPW'
  4. Transcript 'Moocul.CG.ELv1_2.S12...'
  5. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S3582.g17856.01.t

Possible name(s)

Phmamm.CG.MTP2014.S3582.g17856

Location

S3582 [8,797 / 11,382]

Sequences

Amino acid sequence

Length: 468

>Phmamm.CG.MTP2014.S3582.g17856.01.p
MPLRLHIGMGDCFRKLWRTKKAFKHLKLAYDEVKDDPIKGKIRNDFFEVSQHYGVCLHRL
AMHEEAKAVNQNLIEARRQLYVDEESDIVLNMAFFDIAMSLCSLERYEESLNILEKAWKC
VQNISEDIYKGGYSAYIRTKACCLAKLGKGFEAMDLVTAYFISDRMTKDSITQHSVWQHL
IRVFDQCGLYAGCIMCIKEPLECYAQLKQTKSVRKVVKHLQQQIEEFQDKIDNYSECKLD
EDAKQIIKSDFKVKIIHLSNLATSSLKHENLDEAIAYFREIETLLPKVNESPLSLLKLTS
VKFHSFVFGGISAILIGEGQHQEAVMYSKKAFNLPFQNFKRHFNDGSIDATVDLVECFVT
FGRYKEGLAAAKYGIRLCQFLCDNPFVEPKFIEIVSALADCEEMLKISFSLPFDCTPSIY
YNASERYSECYVISGGPGSTNDDIPLRDVGYDVESPADVDDSLSGNAT

Nucleotide sequence

Length: 1,407

>Phmamm.CG.MTP2014.S3582.g17856.01.t
ATGCCACTACGACTTCATATTGGAATGGGTGATTGTTTTAGAAAACTTTGGCGAACCAAA
AAAGCATTTAAACACCTAAAACTTGCATATGATGAAGTGAAAGATGATCCCATAAAAGGT
AAAATAAGGAATGACTTTTTTGAAGTTTCACAACATTATGGAGTTTGCCTACACCGCCTG
GCAATGCACGAAGAAGCTAAAGCAGTTAATCAAAACTTGATTGAAGCAAGACGCCAACTT
TATGTGGATGAAGAGTCGGATATCGTACTGAACATGGCATTTTTTGATATTGCTATGAGT
TTATGCTCTTTAGAAAGGTATGAAGAAAGTCTCAATATTCTTGAAAAGGCTTGGAAATGT
GTGCAAAACATCAGTGAAGACATTTATAAAGGAGGTTACAGCGCATACATTCGGACAAAA
GCTTGTTGTTTGGCAAAACTGGGAAAGGGTTTTGAAGCAATGGATTTGGTGACCGCCTAT
TTTATAAGTGATCGAATGACAAAAGATAGCATTACACAACACTCCGTATGGCAACATTTG
ATTAGAGTCTTTGACCAGTGTGGATTGTATGCAGGATGTATAATGTGTATCAAAGAACCA
TTAGAATGTTATGCACAGCTTAAGCAAACTAAATCTGTTCGTAAAGTGGTCAAGCACTTA
CAGCAGCAAATTGAAGAGTTTCAAGATAAAATTGACAACTACTCTGAATGTAAATTAGAT
GAAGATGCAAAACAAATTATTAAATCCGACTTTAAAGTGAAGATAATTCATCTAAGCAAT
CTTGCCACTAGCTCACTTAAACATGAGAATCTTGACGAAGCTATCGCTTATTTTAGAGAG
ATAGAAACACTCCTTCCAAAAGTTAACGAAAGCCCTTTATCGCTGTTAAAACTAACAAGT
GTCAAATTTCACAGTTTTGTGTTTGGTGGCATTTCAGCAATTCTTATTGGGGAGGGGCAA
CATCAAGAAGCAGTTATGTACTCCAAAAAGGCTTTTAATTTGCCATTTCAGAATTTTAAG
CGACATTTTAATGATGGAAGCATTGATGCAACAGTAGATCTGGTTGAATGTTTTGTTACT
TTTGGACGTTACAAAGAAGGACTTGCAGCAGCAAAATATGGCATCAGATTGTGTCAATTT
TTGTGTGACAATCCTTTTGTGGAACCAAAGTTTATCGAAATTGTTTCAGCATTAGCAGAC
TGTGAAGAAATGTTAAAAATTTCTTTTTCTTTACCTTTCGATTGCACACCATCTATATAT
TACAATGCATCTGAGCGCTATTCAGAGTGTTACGTCATCTCCGGCGGTCCCGGCTCCACG
AACGACGATATTCCCCTTCGTGACGTCGGTTATGACGTGGAGAGTCCGGCCGATGTCGAC
GACTCCTTGTCGGGGAACGCGACCTAG

InterProScan

Gene3D
TPR-like_helical_dom_sf (IPR011990) - T[3-176] 4.5E-8 - T[196-434] 2.4E-7
SUPERFAMILY
TPR-like_helical_dom_sf (IPR011990) - T[6-375] 2.49E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value