- Transcript 'Boleac.CG.SB_v3.S649...' >
- Transcript 'KH2012:KH.C5.632.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S352.g07673.01.t
Possible name(s)
DHDH; SRSF3; SRSF7
Gene model
Location
S352 [30,051 / 37,496]
Amino acid sequence
Length: 493
>Phmamm.CG.MTP2014.S352.g07673.01.p
MSHRDTKVYVGNLSSSTTRGDLEYEFEHYGRLLNVWVAKSPPGFAYVEFEDYRDAEDAIK
GLDGRELQGRRIRVEWSHGGPRGRDSRDSRDSRDSRDSRDSFGVGRNSRRSFHPTDRCYN
CGEAGHYAYDCDLYHRRNSRSSRSRSRGRRSRSDSRGRRSGSETGKKRKSRDPSEENVEA
VAAQRLESAQSFAKDHNIPRAYGSYKELSKDANIDVMYIGVINSMHYEAAKMMLEAGKHV
LCEKPLCLNVGETKSLLDIAKSKKLFLMEAIWSRAFPVYKKVKETIDSGIIGEVRHVRAS
FTAYLGDKMAERCSKKEIAGGAILDIGIYPIQFAQLVFGEKPISQMSSGYLIETGVDGET
HITLGYSGNRRAILNASYFINGPSEGIVCGTKGYIRVLPPLWCPEKMVLHVDGKEEQEFY
YKLPPSKRNDQKYANASGMQYEATEVRNCLMKGLTESPLITAKMTLELAEIMQTARQQMG
YTLPQDEKWNYSK
Nucleotide sequence
Length: 1,482
>Phmamm.CG.MTP2014.S352.g07673.01.t
ATGTCGCACCGAGATACTAAGGTTTACGTGGGCAACCTTTCGTCAAGCACAACCCGAGGT
GACCTCGAGTATGAATTCGAACATTATGGCCGGCTTTTGAATGTCTGGGTGGCAAAAAGT
CCTCCCGGATTTGCTTACGTTGAATTTGAAGATTACCGAGATGCTGAAGATGCCATAAAG
GGTTTGGACGGAAGAGAATTGCAAGGTCGTCGCATCAGAGTTGAATGGTCACATGGTGGC
CCACGAGGCAGGGATTCCCGTGACTCTCGCGACTCTCGTGACTCACGAGACTCACGAGAC
TCATTTGGAGTTGGTCGGAACTCAAGGAGATCCTTTCATCCCACTGACAGATGTTACAAC
TGTGGAGAGGCTGGCCACTATGCATATGACTGTGATCTGTACCATAGACGCAACTCAAGA
AGTTCTAGATCTCGTTCCCGTGGAAGACGCTCTCGTTCAGACTCTCGTGGTCGCAGATCT
GGCAGCGAAACTGGCAAAAAGAGGAAATCTCGTGATCCATCAGAGGAAAACGTTGAAGCA
GTGGCAGCACAAAGGCTTGAAAGTGCCCAGTCATTTGCAAAAGATCACAACATACCAAGA
GCATATGGAAGTTATAAGGAACTTTCTAAAGATGCTAATATAGATGTAATGTACATTGGT
GTGATCAACTCTATGCACTATGAGGCAGCCAAGATGATGTTAGAGGCTGGAAAACATGTT
TTGTGTGAAAAACCATTGTGTTTAAATGTTGGTGAAACCAAAAGTCTTCTGGACATTGCA
AAATCAAAAAAACTATTTCTCATGGAGGCGATATGGAGTCGAGCATTTCCTGTTTACAAG
AAGGTAAAGGAAACAATCGACAGTGGCATAATTGGGGAAGTTCGCCATGTACGAGCCAGT
TTCACCGCCTACCTTGGAGACAAGATGGCAGAAAGATGTAGTAAAAAAGAGATAGCAGGG
GGAGCCATACTTGATATAGGTATTTACCCAATTCAATTTGCTCAGCTTGTTTTTGGTGAG
AAACCCATCAGCCAAATGAGTTCTGGGTATCTTATTGAGACTGGAGTGGATGGGGAAACA
CACATTACTTTGGGATATAGTGGCAATCGCAGAGCAATACTAAATGCATCCTATTTTATT
AATGGACCAAGCGAAGGAATTGTTTGTGGAACAAAAGGATACATTAGAGTTCTTCCGCCG
TTGTGGTGTCCAGAAAAAATGGTGTTACATGTTGATGGAAAAGAAGAACAAGAGTTCTAC
TACAAGTTACCACCATCCAAAAGGAATGATCAAAAGTATGCCAATGCTTCTGGAATGCAG
TATGAAGCAACGGAAGTTAGGAACTGCCTCATGAAAGGTTTAACCGAATCGCCACTGATT
ACTGCTAAAATGACTTTGGAATTAGCAGAAATTATGCAGACTGCCAGACAGCAAATGGGT
TACACTCTTCCACAAGATGAAAAGTGGAACTATTCAAAATAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-79] 8.1E-24 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[5-105] 2.42E-26 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[6-79] 18.189 |
| SMART |
RRM_dom (IPR000504) - T[7-75] 3.1E-22 |
| Pfam |
RRM_dom (IPR000504) - T[8-73] 5.0E-17 |
| SUPERFAMILY |
Znf_CCHC_sf (IPR036875) - T[105-136] 1.53E-6 |
| ProSiteProfiles |
Znf_CCHC (IPR001878) - T[117-131] 10.691 |
| Pfam |
Znf_CCHC (IPR001878) - T[117-132] 1.7E-6 |
| SMART |
Znf_CCHC (IPR001878) - T[117-133] 6.8E-4 |
| Pfam |
Oxidoreductase_N (IPR000683) - T[173-267] 6.2E-20 |
| SUPERFAMILY |
NAD(P)-bd_dom_sf (IPR036291) - T[178-303] 2.06E-39 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF3_HUMAN | 58.025 % | 97.4 | 8.71E-24 |
| SRSF7_HUMAN | 53.543 % | 134 | 1.89E-36 |
| DHDH_HUMAN | 41.139 % | 238 | 9.22E-75 |