- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S341.g07528.01.t
Possible name(s)
LHX1; LHX5
Gene model
Location
S341 [67,347 / 70,954]
Amino acid sequence
Length: 394
>Phmamm.CG.MTP2014.S341.g07528.01.p
MAAPNCSCCGETILDQHILQLDNKVFHEECVKCRDCQCQLREKCYTRDGWLFCSEDFTRR
YGSKCAGCLLPIFATDPVHTFRPHTDTTTVYHVDCFACFACGRKLLPGNEVYFSSDNKAL
CSDDYLKGNFQQPENFSPSHNDESSVVTMPCVDDNDVKEALDGTGYDWVTGDSEANTPKA
ESVDSSLSSGDSTALPVCVPPTKRRGPRTTIKAKQLDALKAAFAATPKPTRHIREQLARD
TGLSMRVIQVWFQNRRSKERRMKQLNVFGNRRHFFERNGPVRMRDTPKVDHLINSLYQQE
NVQFAPNHNSASGIPPQNEGNYLFPGTMLSAEVGQSEWGPEQVAQHSAMGCFVPPQNFQN
KLPQSKGYFIMATSPNGKPQIPDDVSDMQYWARE
Nucleotide sequence
Length: 1,185
>Phmamm.CG.MTP2014.S341.g07528.01.t
ATGGCCGCCCCCAACTGCTCGTGCTGCGGCGAAACCATTTTAGACCAACACATTCTGCAG
CTTGACAACAAAGTTTTTCACGAGGAATGTGTGAAATGTCGAGATTGTCAATGTCAGCTG
AGAGAAAAGTGTTACACTAGAGATGGCTGGTTGTTCTGTTCGGAAGATTTTACCAGGCGT
TACGGTAGCAAATGTGCAGGATGTTTGCTTCCAATCTTTGCCACCGACCCTGTGCACACT
TTTCGACCACACACCGACACTACGACTGTATACCACGTTGACTGTTTCGCGTGCTTCGCT
TGCGGCCGAAAGCTGTTGCCAGGCAACGAAGTTTATTTCTCTTCGGACAACAAAGCTCTG
TGCAGTGACGATTATTTAAAGGGAAATTTCCAACAACCAGAAAATTTCAGTCCAAGCCAT
AACGACGAATCGAGTGTCGTCACAATGCCTTGCGTCGACGACAATGACGTGAAAGAAGCT
TTAGACGGCACTGGGTACGACTGGGTAACAGGGGACAGCGAAGCAAACACCCCTAAAGCG
GAATCAGTGGACAGCAGTTTATCTAGTGGCGATTCTACTGCTTTGCCAGTTTGCGTTCCA
CCGACAAAACGACGAGGCCCACGGACCACAATCAAAGCAAAACAACTGGACGCGCTGAAG
GCTGCGTTTGCTGCGACACCGAAACCCACCCGCCATATTAGAGAACAGCTTGCCAGAGAC
ACCGGACTGAGTATGAGAGTTATACAGGTATGGTTTCAAAATCGACGAAGTAAGGAGCGA
CGAATGAAGCAATTAAACGTATTTGGAAATCGACGCCATTTTTTTGAGCGAAACGGCCCA
GTTCGCATGCGAGATACACCAAAAGTGGATCACCTTATCAATTCGTTATACCAACAAGAA
AATGTCCAATTCGCTCCAAATCACAATTCGGCATCGGGGATTCCCCCTCAGAATGAAGGA
AATTATCTGTTTCCCGGTACAATGCTTTCCGCTGAGGTGGGACAGTCAGAGTGGGGTCCG
GAACAAGTAGCTCAACATTCGGCAATGGGCTGCTTTGTGCCTCCACAGAACTTTCAGAAC
AAACTGCCACAATCAAAAGGATATTTTATCATGGCCACGTCACCGAACGGCAAACCTCAA
ATACCTGATGACGTCAGCGACATGCAGTATTGGGCTAGGGAGTAA
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[4-63] 13.088 - T[64-131] 9.296 |
| SMART |
Znf_LIM (IPR001781) - T[5-56] 2.7E-9 - T[64-124] 1.9E-8 |
| Pfam |
Znf_LIM (IPR001781) - T[6-60] 1.3E-10 - T[65-127] 1.8E-9 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[6-40] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[185-263] 7.7E-21 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[202-262] 18.431 |
| SMART |
Homeobox_dom (IPR001356) - T[204-266] 1.4E-22 |
| Pfam |
Homeobox_dom (IPR001356) - T[205-261] 1.3E-19 |
| CDD |
Homeobox_dom (IPR001356) - T[205-263] 4.58767E-21 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[237-260] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 35.632 % | 167 | 6.29E-48 |
| LHX5_HUMAN | 46.809 % | 238 | 3.78E-75 |
| LHX1_HUMAN | 46.875 % | 239 | 1.61E-75 |