- Transcript 'KH2012:KH.C12.156.v1...' >
- Transcript 'KH2012:KH.C4.547.v1....' >
- Transcript 'KH2012:KH.C7.391.v1....' >
- Molecular Tool 'Mesp>Mek_S220E-S216D' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S320.g07208.02.t
Possible name(s)
HOXC12; HOXD11; HOXD12
Gene model
Location
S320 [117,811 / 119,942]
Amino acid sequence
Length: 463
>Phmamm.CG.MTP2014.S320.g07208.02.p
MTAQSDSTGNYHLNMNFVVSDGNPHPAPSLPPNIISIEHSAPPPLQMDSTKVYSPSDGYL
GRSRLPSDAELGHIASHQYQRGEDIHHWSEQPKYSTALPTTDTRHKDQISVQHLQREVKH
IKPEAHQPWKNHTSVPISFGENVPSYIPEIHRKVSNSQSVDGADSTGELRVSPKSLASVS
QSDQENGRHQPTSGVDEITRRVLQQPIPVKTDMSSPIHPAFSTVGKPAQDHGAGYYTNDL
KSRITSQGLYGNVGNTDHSRYSVSHTPASHEYHQFDSISQATAVATSHSTDGLYFGTGKS
NFSSGSRIFWRKSNKFFLQWTTTVRQSTNTPIFITHIITTKPVFTLHQLILRRSLLKHYS
PDMTTIGRTGHQRRRRRPYTKYQLAELEREFAMNEFISREMREAIAHKVNLSDRQVKIWF
QNRRMKKKRMLNRGELGGEDEDEDKLANDEETDERRELTFISP
Nucleotide sequence
Length: 1,392
>Phmamm.CG.MTP2014.S320.g07208.02.t
ATGACAGCGCAAAGCGATTCAACGGGGAATTACCACTTAAACATGAATTTTGTTGTCAGC
GACGGGAACCCTCATCCTGCCCCATCATTGCCCCCAAATATCATTTCAATTGAACATTCG
GCTCCTCCTCCCTTACAGATGGACTCCACAAAGGTATATTCCCCTTCAGATGGGTATTTG
GGGCGATCAAGGCTTCCTAGTGACGCTGAGCTAGGACACATTGCAAGTCACCAGTACCAA
CGTGGGGAAGATATTCACCACTGGTCTGAACAGCCGAAATATTCCACGGCTCTGCCAACA
ACCGACACCCGTCATAAGGATCAAATTTCGGTGCAACATTTGCAAAGGGAGGTGAAGCAT
ATTAAACCAGAAGCCCACCAGCCCTGGAAAAACCACACTTCCGTACCTATTTCCTTTGGC
GAGAACGTGCCTTCATACATTCCGGAAATACACCGGAAAGTAAGCAACTCCCAGTCTGTA
GATGGCGCCGATTCAACAGGGGAGCTGCGCGTCTCGCCCAAGTCCCTCGCTTCAGTGAGC
CAAAGCGACCAGGAAAATGGCCGACATCAGCCGACGTCGGGCGTCGATGAGATCACGCGG
CGGGTTTTGCAGCAACCGATCCCGGTCAAGACCGACATGTCGAGCCCGATCCATCCCGCA
TTTTCGACAGTCGGCAAACCGGCGCAAGATCACGGTGCTGGGTACTACACAAACGATTTA
AAATCCCGCATAACTTCACAGGGTTTGTACGGTAATGTTGGAAACACGGATCATTCAAGG
TATTCAGTTTCACATACCCCAGCCAGCCACGAATACCATCAGTTTGACTCGATCAGTCAA
GCCACAGCGGTTGCTACCAGTCATTCCACAGACGGCTTGTACTTCGGAACTGGTAAGTCA
AACTTCTCATCTGGAAGCCGAATATTTTGGCGGAAAAGTAATAAGTTTTTTTTGCAGTGG
ACCACTACGGTGCGCCAATCCACCAATACCCCCATTTTTATTACCCACATTATCACCACC
AAACCGGTCTTCACGCTCCATCAGCTGATTTTACGCCGTTCTCTTCTCAAGCATTACTCC
CCTGATATGACGACGATCGGCCGCACCGGTCACCAGCGTCGCCGCCGCCGCCCGTACACC
AAGTACCAGTTAGCTGAATTGGAAAGGGAATTCGCTATGAACGAGTTCATCAGCAGGGAA
ATGCGAGAGGCAATAGCCCATAAGGTTAACTTAAGCGACCGACAAGTCAAGATTTGGTTT
CAAAATCGTCGCATGAAGAAGAAAAGGATGTTGAACCGCGGGGAACTTGGCGGCGAAGAT
GAGGACGAAGACAAGTTAGCGAACGACGAAGAGACCGACGAACGCCGAGAACTGACTTTT
ATTAGTCCCTGA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[359-430] 1.37E-22 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[370-430] 20.633 |
| SMART |
Homeobox_dom (IPR001356) - T[372-434] 6.6E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[373-429] 4.4E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[379-430] 1.70061E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[405-428] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXC12_HUMAN | 65.574 % | 93.6 | 2.2E-21 |
| HXD12_HUMAN | 55.556 % | 97.4 | 7.75E-23 |
| HXD11_HUMAN | 60.938 % | 85.1 | 4.26E-18 |