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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S5...' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  3. Transcript 'Haaura.CG.MTP2014.S6...' > 
  4. Transcript 'Mooccu.CG.ELv1_2.S50...' > 
  5. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S3201.g17547.01.t

Possible name(s)

CIITA; NLRC5; NLRP1

Gene model

Phmamm.CG.MTP2014.S3201.g17547

Location

S3201 [4,994 / 8,425]

Sequences

Amino acid sequence

Length: 591

>Phmamm.CG.MTP2014.S3201.g17547.01.p
MNQILFYTGEAQPQNEEYNPRSRPTLASLGPLLPHELFSEREGRVPRVVGVLGEAGAGKS
TISRRLCDATDKIILHANFMNMDYNYDVTIAEILLSKRYNCDDRATKEFFDWIERHQEEC
RLILDGYDQASWQNLDNPLNINPHNKATIDVIMGNLFNAGILPRMQLLLTSRPHAMLGLP
VNLQPDRVVMLNGFSPGDAEELFIHLVGDSGADQWQRLQRRAPQLPFMCANPAMLVYISA
ACCEGGNDVTSITSVLHLVLRGVQRSVGRTLIPVEELMPKVEEIAYRATRRGTVLITENN
LREVELEIKDVQDITIVLPAGFLNTPMFDGEHKLYFNHQTLQEFFSSKYAVSEKMDLTTF
KHFVKDDLFEFHWTMVRRFAAALLINSAFNADSKAVRLTLRPSLKRRLSRPLQCIGISNV
CERQLFIDLLLDVRECDNEEVTRAIAKRFPSKVILEQTPFTASEAHAFAFVLRHVTKRIE
YMDLRYCNLTTHKFELICSGIVEMDSVVDNVNFHNNSLDTDGARVVASILPKVGRLGMGD
AFIEAGGTRRNVNEDERAVIQAELDRIQNLRLVVCVGGLRDVMQAHPVTQG

Nucleotide sequence

Length: 1,776

>Phmamm.CG.MTP2014.S3201.g17547.01.t
ATGAACCAAATCCTCTTCTACACCGGTGAAGCTCAGCCCCAAAACGAGGAGTACAACCCA
CGTTCTCGCCCCACCCTTGCCAGTCTCGGCCCCCTACTGCCTCATGAGTTGTTTAGCGAG
CGCGAGGGGAGAGTCCCTCGTGTTGTAGGGGTACTGGGTGAAGCTGGAGCGGGAAAATCC
ACAATCAGCAGAAGGCTTTGTGACGCAACAGACAAGATTATCCTCCACGCCAACTTCATG
AACATGGATTACAACTATGACGTCACAATCGCTGAGATATTGTTGAGTAAGCGATACAAT
TGTGACGACAGAGCCACTAAGGAGTTTTTCGATTGGATTGAAAGGCACCAGGAAGAATGT
AGGTTGATATTGGACGGTTACGACCAGGCCAGCTGGCAAAATTTAGACAATCCACTCAAC
ATCAACCCGCATAACAAAGCCACTATTGACGTCATAATGGGCAATCTCTTCAACGCGGGA
ATCCTCCCCAGGATGCAACTGTTGTTGACGTCACGTCCGCATGCGATGCTCGGACTTCCG
GTGAACCTTCAGCCAGATCGTGTCGTCATGCTCAACGGATTTTCTCCTGGTGATGCAGAG
GAGCTATTCATCCATCTAGTGGGGGATTCGGGAGCAGATCAATGGCAACGTCTTCAACGT
AGAGCACCTCAACTCCCATTCATGTGCGCCAACCCAGCCATGCTCGTCTACATATCCGCA
GCGTGTTGCGAAGGAGGCAATGACGTCACCAGTATTACGTCAGTGCTGCACCTAGTATTG
AGGGGGGTGCAGAGATCAGTGGGCCGGACTTTGATTCCGGTCGAAGAGTTAATGCCCAAA
GTTGAGGAAATTGCTTACCGAGCCACCAGAAGAGGAACGGTCCTCATCACTGAAAATAAT
CTCAGGGAAGTTGAGCTTGAAATCAAGGATGTACAGGACATCACCATCGTTCTTCCAGCC
GGATTCCTTAACACCCCCATGTTCGATGGGGAACACAAGCTTTACTTCAACCATCAAACC
CTCCAAGAGTTCTTCTCATCGAAGTATGCAGTGAGTGAAAAGATGGATCTCACCACATTC
AAACATTTCGTAAAGGACGACTTGTTTGAGTTTCACTGGACGATGGTTCGACGCTTCGCT
GCTGCTTTGCTCATCAACAGTGCCTTTAATGCAGATAGTAAAGCTGTGAGGCTGACCCTT
CGCCCATCGTTAAAAAGGAGACTCAGTAGACCATTGCAGTGCATCGGAATCAGCAATGTC
TGTGAGCGGCAGTTATTCATTGATCTGCTTTTGGACGTGCGTGAATGTGACAATGAAGAA
GTAACACGAGCGATTGCAAAACGTTTTCCGAGCAAGGTGATTTTGGAACAAACACCCTTT
ACTGCAAGTGAAGCACATGCTTTTGCATTCGTCCTTCGACATGTAACAAAAAGGATTGAA
TACATGGATCTGCGATACTGCAACCTTACAACGCACAAATTCGAACTCATCTGTTCAGGA
ATTGTTGAAATGGACTCAGTGGTCGATAATGTCAACTTCCACAACAACTCTTTGGACACT
GATGGTGCCAGAGTGGTGGCAAGTATTTTACCAAAGGTTGGCAGGTTAGGAATGGGAGAT
GCATTTATTGAGGCGGGTGGAACAAGACGAAATGTAAATGAGGATGAGAGGGCTGTCATA
CAGGCAGAACTAGATCGCATCCAAAACCTTAGGCTTGTGGTTTGTGTTGGAGGCCTACGA
GATGTTATGCAAGCCCATCCAGTGACACAGGGATAA

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[41-213] 1.5E-8
Pfam
NACHT_NTPase (IPR007111) - T[47-206] 3.6E-13
Gene3D
LRR_dom_sf (IPR032675) - T[431-545] 1.7E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NLRC5_HUMAN 22.445 % 84.7 7.13E-17