- Transcript 'Phfumi.CG.MTP2014.S9...' >
- Transcript 'Phfumi.CG.MTP2014.S9...' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S315.g07135.01.t
Possible name(s)
TDRD1; TDRD15; TDRD6
Gene model
Location
S315 [89,462 / 92,213]
Amino acid sequence
Length: 916
>Phmamm.CG.MTP2014.S315.g07135.01.p
MSIQQSQQYRNKKSGIRGNEEKNSTLYILGIPPELTENALQNLFSTFGNVTLVNILPPKH
GQTCKAGFVEFENLVQAELAIKSLNGFKLGEYTLKVEKAKPRKLRCEEGNKNDYLSLIQK
LEKGPLLQKELLDITNNNNAGSYKNPLVSESFSGSIEESSNKCSLPNAVPEGAQNQGSTL
KDKRNPCHVCGQLTKSMCSSCSSVFYCSRNCQVKDWSKHKLNCNRNNSRKSESLENDEDS
DSPLIVVDSSICNQFAKHLKAVSKQSSAIICNGTKVQAVCTKINSFTSQISCGDLIRFSV
TDVDAKNACFICQSVMPNDIVNLNELQVGLNKFYNDRNASKVASPKVGNFVAAVYAEDGQ
WYRAVIERVSPDDKALVKFIDYGNKELVNFTDLYVLKEMFCTQSAFSVNCKLNGMGSEPW
NEKALECILSALSGSNLIIDACIAEVMDGVVYAEVKANGVGIAENLLRIACVSPVAEIGK
SKNDESVAEQTNPNMHHLENEMEQKIQNHDSKLKDVVEIAKNGFDLLPMKIPDGSFQIII
SHTVCPDSIFCQLIQSGLYELQTQFKELTQICNSNKVSSWIPRTGDICAAMFPEDNVWYR
AKVVGLKKEKDVVKVQFVDFGNTEMIPNHLIQQLPSQFALLPVQAFEASLSGCYAKDDTW
SKDCISLIKEWQNKSFLARVEGTCADTGKPSLTVFVDEKSTLNELLVKEKHVLKVPYAKT
EPDVPKFEVCQTIEKQKPPLGVNVDIIITECNQPGEFFCQLVSQQLQQLAETLQDLTKHC
KEAPSFPTECLSEMFCSALFKDGMWYRAQVKQVDDNTIFVEYVDYGNSALISKHNVQLLP
AKFGSLPVQAFKCNLADASPVCDEGWGEDFINVTQNFVGKCIHAQIVSCDDDDMLFIKVP
NLLNSLIVEKCALYCF
Nucleotide sequence
Length: 2,751
>Phmamm.CG.MTP2014.S315.g07135.01.t
ATGTCAATTCAGCAGTCTCAACAGTACAGAAACAAGAAATCAGGTATTAGGGGAAATGAA
GAAAAAAATAGCACCCTTTATATCTTGGGTATTCCACCAGAGTTGACTGAAAATGCATTA
CAAAATCTGTTTTCAACTTTTGGCAATGTTACATTGGTAAATATTCTGCCACCAAAACAT
GGTCAAACATGTAAAGCTGGTTTTGTGGAATTTGAAAACCTGGTACAAGCTGAGTTGGCA
ATCAAAAGTTTGAATGGCTTCAAGCTTGGAGAATACACATTAAAGGTTGAAAAAGCGAAA
CCTCGCAAGCTTAGGTGTGAAGAAGGTAACAAAAATGATTATCTTTCCCTAATTCAAAAG
TTGGAAAAGGGCCCTTTGCTGCAAAAAGAATTGCTGGACATTACAAACAACAATAATGCA
GGCAGTTATAAAAATCCTTTGGTATCTGAATCCTTTTCTGGCTCAATTGAAGAATCAAGT
AATAAATGCTCGCTTCCCAATGCTGTTCCCGAAGGTGCACAGAATCAGGGAAGTACCTTG
AAGGATAAAAGAAACCCTTGTCATGTGTGTGGTCAGTTGACCAAAAGCATGTGTAGTTCA
TGTAGTTCTGTATTTTATTGCAGTCGCAACTGTCAGGTGAAGGACTGGTCAAAGCATAAG
CTAAACTGCAATCGCAACAATTCAAGAAAATCAGAATCACTTGAAAATGATGAGGACAGT
GACTCACCACTCATTGTTGTTGACAGTTCAATTTGTAATCAATTTGCAAAACACCTAAAA
GCAGTATCCAAGCAATCATCTGCAATTATTTGTAATGGTACAAAAGTACAAGCAGTTTGT
ACCAAAATAAATTCATTCACTTCCCAAATATCTTGTGGTGATCTCATAAGATTCTCTGTC
ACAGATGTGGATGCTAAAAATGCTTGTTTTATTTGTCAGTCAGTAATGCCAAATGACATT
GTGAACCTAAATGAATTACAAGTGGGTTTGAATAAGTTTTATAATGACAGAAATGCTTCA
AAAGTTGCCTCACCTAAAGTTGGCAATTTTGTGGCTGCTGTGTATGCAGAAGATGGACAG
TGGTATCGAGCAGTGATTGAGAGGGTCTCTCCTGATGATAAAGCTTTGGTCAAGTTTATT
GACTATGGTAACAAGGAGTTGGTTAATTTTACTGACCTATATGTTCTCAAGGAAATGTTT
TGCACACAGTCTGCATTTTCTGTGAACTGCAAACTCAATGGAATGGGATCAGAGCCATGG
AATGAAAAAGCACTTGAGTGTATTTTATCTGCTTTAAGTGGCAGCAACTTAATTATTGAT
GCTTGTATTGCTGAAGTGATGGATGGTGTGGTGTATGCAGAAGTTAAAGCAAATGGAGTT
GGAATTGCAGAAAATCTCTTGCGCATTGCTTGTGTCTCACCAGTAGCAGAGATTGGCAAA
TCTAAAAATGATGAAAGTGTAGCAGAGCAAACAAATCCAAATATGCATCATTTAGAAAAT
GAAATGGAACAAAAAATACAAAACCATGATTCTAAGCTCAAAGATGTGGTTGAAATTGCA
AAGAATGGTTTTGATTTGCTGCCAATGAAAATTCCAGATGGGTCCTTTCAGATAATTATT
TCTCACACTGTATGCCCAGATTCTATATTTTGTCAGTTGATCCAAAGTGGGCTTTATGAG
TTGCAAACTCAGTTTAAAGAACTAACACAGATTTGCAATTCTAATAAAGTGTCATCATGG
ATTCCAAGGACTGGTGATATTTGTGCTGCAATGTTTCCAGAAGACAATGTTTGGTATCGT
GCAAAAGTTGTTGGTCTGAAGAAAGAAAAAGATGTGGTTAAGGTCCAATTTGTAGATTTT
GGAAATACTGAGATGATTCCAAATCACCTTATTCAGCAACTCCCATCACAATTTGCTTTA
CTTCCAGTCCAAGCTTTTGAAGCATCTTTAAGTGGCTGCTATGCCAAAGATGATACCTGG
TCTAAAGACTGCATATCACTTATAAAAGAATGGCAAAATAAGTCGTTTTTGGCTCGTGTG
GAAGGTACTTGTGCCGATACAGGCAAACCAAGCTTGACAGTTTTTGTGGATGAAAAGTCA
ACATTAAACGAGTTGTTAGTAAAGGAAAAACATGTCTTGAAAGTGCCATATGCTAAAACG
GAACCAGATGTACCAAAATTTGAGGTGTGTCAAACCATAGAGAAACAAAAACCTCCTCTG
GGTGTTAATGTGGATATTATTATTACTGAATGCAATCAACCTGGAGAATTTTTCTGCCAA
TTAGTATCACAACAACTGCAGCAATTGGCGGAGACTTTGCAAGACTTAACCAAGCACTGC
AAAGAAGCACCATCCTTTCCAACTGAATGTTTGTCTGAAATGTTTTGCTCAGCATTGTTT
AAGGATGGAATGTGGTACAGGGCTCAGGTTAAACAGGTAGATGACAACACAATTTTTGTT
GAATATGTTGATTATGGAAATTCAGCACTGATTTCAAAGCACAATGTTCAACTTTTACCT
GCCAAGTTTGGGTCTCTTCCTGTACAAGCATTTAAATGTAACTTGGCAGATGCTAGCCCT
GTCTGTGATGAAGGTTGGGGTGAAGATTTCATCAATGTCACACAAAATTTTGTAGGAAAA
TGCATACATGCACAAATAGTTTCATGTGATGATGATGACATGCTCTTCATTAAAGTTCCC
AATTTGTTGAATTCTTTGATTGTTGAAAAATGTGCATTGTACTGCTTTTAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-114] 4.5E-21 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[6-108] 1.75E-22 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[24-101] 16.398 |
| SMART |
RRM_dom (IPR000504) - T[25-97] 3.5E-17 |
| Pfam |
RRM_dom (IPR000504) - T[26-95] 1.5E-13 |
| ProSiteProfiles |
Znf_MYND (IPR002893) - T[187-223] 11.343 |
| ProSitePatterns |
Znf_MYND (IPR002893) - T[187-223] . |
| Pfam |
Znf_MYND (IPR002893) - T[187-223] 1.1E-10 |
| Pfam |
Tudor (IPR002999) - T[294-414] 5.8E-21 - T[535-652] 6.6E-25 - T[740-856] 1.6E-23 |
| SMART |
Tudor (IPR002999) - T[343-401] 2.2E-16 - T[580-639] 5.7E-13 - T[787-844] 1.7E-10 |
| ProSiteProfiles |
Tudor (IPR002999) - T[344-403] 17.333 - T[581-641] 18.421 - T[783-846] 13.182 |
| Gene3D |
SNase_OB-fold_sf (IPR035437) - T[539-708] 2.4E-35 - T[747-893] 7.7E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TDRD1_HUMAN | 26.684 % | 194 | 5.87E-51 |
| TDRD6_HUMAN | 22.605 % | 96.3 | 4.73E-20 |
